Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 34 [0] [0] 34 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)34 (0.870) 32/264 0.2 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGC  >  NC_000913/3815813‑3816071
                                                                                                                               |                                                                                                                                   
gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagccgcctcaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                                                      >  2:724207‑M2/128‑143 (MQ=255)
      tttcaataacccggcgctgatatggtttcatgccttcgctccgcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgatg                                                                                                                <  2:643036‑M2/22‑1 (MQ=255)
       ttcaataaactggcgctgatatggtttcatgccttcgctcatgatcttacttttgtagagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                               >  2:124354‑M2/121‑143 (MQ=255)
        tcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagccaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATCATgcg                                                                                                              >  2:493297‑M2/120‑143 (MQ=255)
           ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGccc                                                                                                           <  1:264459‑M2/27‑1 (MQ=255)
             aaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGGACTTCAGTGGTGCCCCCGt                                                                                                         >  2:391160‑M2/115‑143 (MQ=255)
                                 tcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTc                                                                                     <  2:590644‑M2/49‑1 (MQ=255)
                                     gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGAAGTTCTACTTTTGGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                 >  2:495704‑M2/91‑143 (MQ=255)
                                        ttcgctcctcatcttacttttctacagacaaaaaaaatgctactcatcagtcgacttaaaaatcagtttgccagcgccgcctactacCGTCCCCGGCACTTCAATGATGCGCCCGCCTTCGGTCATCACTACGTTCATGTCgg                                                                              >  1:484870‑M2/88‑143 (MQ=255)
                                                tcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaatttgccaccgccgccttctgcCGTCCCCTGCACTTCCATGATGCGCCCGTCTTCGGCCATCCCTACGTTCACGCCGGTGCCTGCg                                                                      >  1:234165‑M2/80‑143 (MQ=255)
                                                 catcttactgttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                                                     <  1:395361‑M2/65‑1 (MQ=255)
                                                       acttttctacagacaaaaaaaaggcgacgcatcagtcgccttaaaactcattttgcctgcggcgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt                                                               <  1:352320‑M2/71‑1 (MQ=255)
                                                        cttatgaacagagaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCTATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTc                                                              <  2:232792‑M2/72‑1 (MQ=255)
                                                         ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                                                             >  2:396083‑M2/71‑143 (MQ=255)
                                                           ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGGCGGTCTCTGCGGCAGAGTCTTc                                                           >  2:220643‑M2/69‑143 (MQ=255)
                                                               acagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                       >  2:417489‑M2/65‑143 (MQ=255)
                                                                 agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagttggccagcaccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                                                     >  2:543122‑M2/63‑143 (MQ=255)
                                                                  gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCACCGTAt                                                    >  2:226382‑M2/62‑143 (MQ=255)
                                                                     cagaaaaaggcgactcatcagtcgccttaaaagtcagtttgccagcgccgccttctgcCTTGCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc                                                 <  1:634293‑M2/85‑1 (MQ=255)
                                                                        aaaaatgcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGa                                              >  1:560173‑M2/56‑143 (MQ=255)
                                                                         aaaaggctactcatcagtagccttaaaaagcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                             <  2:492388‑M2/89‑1 (MQ=255)
                                                                          agaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTTCACTTCTATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc                                            <  1:634682‑M2/90‑1 (MQ=255)
                                                                          aaaggcgcctcctcagtcgccttaaagatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGGTTCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc                                            <  1:101056‑M2/90‑1 (MQ=255)
                                                                                   tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTATGTGCGGCTGAGTCTTCAACGTATTCCAGATCGCCAACcgt                                   >  2:495683‑M2/45‑142 (MQ=255)
                                                                                     atcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCAATCAACAGACATCGCTACGCCCACCTCGTTCTTTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCtt                                 >  2:200573‑M2/43‑143 (MQ=255)
                                                                                      tcagtcgccttaaaaatcagtttgccagcgccgccttcagcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTc                                <  2:54499‑M2/102‑1 (MQ=255)
                                                                                          tcgccttaaacatccgtttgccagcgccgccttctgcCGCCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCg                            <  1:561969‑M2/106‑1 (MQ=255)
                                                                                                  aagaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAAt                    <  2:437739‑M2/114‑1 (MQ=255)
                                                                                                    aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCCGATCGCAAACCGCTCCGCCCTTCCCAATTc                  >  1:166095‑M2/28‑143 (MQ=255)
                                                                                                      ccagttcgccagcgccgccttctgcCGTCCCCTGCACTTCAACGATGCGCCCGTCTTCGGTCATCACTACGTCCATGTCGGTCTCTGCGGCACAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCg                <  1:462052‑M2/118‑1 (MQ=255)
                                                                                                        agtttgcctgcgccgccttctgcCGTCCCCTGCACGTCAATGGTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAc              <  1:727005‑M2/120‑1 (MQ=255)
                                                                                                              ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGGCTCTGCGGCAGAGACTTCAACGTATTCCAGATCGCAAACCGcttcgccgttcacaaatacaaaaaacac        >  2:366756‑M2/18‑130 (MQ=255)
                                                                                                                agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGCCAGAAACTg      >  2:506522‑M2/16‑143 (MQ=255)
                                                                                                                    ccgccttctgcCCTCCCCTGCACTTCATTGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCGCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGc  <  1:194192‑M2/132‑1 (MQ=255)
                                                                                                                               |                                                                                                                                   
CTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGC  >  NC_000913/3815813‑3816071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.