| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 27 [0] | [0] 28 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 27 (0.670) | 24/270 | 0.7 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTA > NC_000913/3909170‑3909440 | cttaACCGCCCGCGACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACCGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgc < 2:349932‑M1/142‑3 (MQ=255) accagCCCGCCACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgca < 2:572870‑M1/141‑6 (MQ=255) aCAGCCCGCTACCCGCCAGAGCGGTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaa < 1:643416‑M1/143‑7 (MQ=255) cccGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTACTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGCTGGGGGACATCGAAATCCAGACCAGCCAGgggcgagcac > 1:575422‑M1/1‑133 (MQ=255) cGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcag < 2:687720‑M1/143‑13 (MQ=255) agagCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCGGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagg > 2:9040‑M1/1‑120 (MQ=255) ggggttcGCCAGACACCCGCCTGCGCTATTGGGCGGCGGCGTGATGTCAGTGAACAGGGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggc < 2:523408‑M1/140‑26 (MQ=255) tCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgatac < 2:559093‑M1/143‑31 (MQ=255) ccAGACCCCCACCTTCCGTATGGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccga < 2:466834‑M1/143‑34 (MQ=255) aGACCACCACCTTCCGGATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAACATCCAGATCAGCCAGgcgcaagcgcagtcaggaaccgggcgcgacgggca > 1:564427‑M1/1‑108 (MQ=255) gACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGGTACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgacaccgaaac > 1:357226‑M1/1‑107 (MQ=255) accaccaccTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGCGTGATGGTGGACATTAAAAGCCAGCTCAGCCAGgcgcaggctcagtcaggaccagggcgataccgcgacg > 2:195502‑M1/1‑106 (MQ=255) ggcggcgTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgaccagcagc > 2:514962‑M1/1‑84 (MQ=255) tCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcggtcagccgcgcgataa > 1:73371‑M1/1‑77 (MQ=255) agcgccagcgccATACCGTCGATACCGCGAGTGATGGTGGCCATTAAAATCCAGATCAGCCAGgcgccagcgcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaggccacccac > 2:246871‑M1/1‑63 (MQ=255) aGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaac < 2:27196‑M1/143‑81 (MQ=255) gcCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacacggcgataccgaaactcaccgggacggcgctcagcagcgcgataaacgaagccaccaccgcc > 1:183705‑M1/1‑60 (MQ=255) cgcgAGTGATGGTGGACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgagcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccc > 1:651714‑M1/1‑38 (MQ=255) tGATGGTGGACATTAACATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtaga < 2:193784‑M1/143‑112 (MQ=255) cgaTGGTGCACAGTAACAGCCAGATCAGCCAGgcgcaagcgcagtcaggagcagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtaga < 1:862‑M1/142‑112 (MQ=255) gtggACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggcgcagggcgataccggccctcaccgggacggcgatcagcagcgcgataagcgaagtcaccaacggaccgtagatcggcaccagcgccccgtagatatcg < 2:272435‑M1/143‑117 (MQ=255) gtggACATTAAAAGCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcg < 2:656913‑M1/143‑117 (MQ=255) gACATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttc > 2:519480‑M1/1‑24 (MQ=255) cATTAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcgg > 2:362207‑M1/1‑22 (MQ=255) actaagagccagatccgcCAGgcgcaagctcagtcaggcacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggt < 1:72047‑M1/135‑123 (MQ=255) ttAAAATCCAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtg < 2:694599‑M1/143‑124 (MQ=255) ccAGATCAGCCAGgcgcaagctcagtcaggaacagggcgataccgaaactcaccgggacggcgatcagcagcgcgataaacgaagtcaccaacgtaccgtagatcggcaccagcgccccgtagatatcgttcggtgcatccca < 2:663545‑M1/143‑131 (MQ=255) | ATTAACAGCCCGCTACCCGCCAGAGCGTTCGCCAGACCACCACCTTCCGTATTGGGCGGCGGCGTCATTTCAGTGAACAGCGCCAGCGACATACCGTCGATACCGCGAGTGATGGTGGACATTAAAATCCAGATCAGCCAGAACAGGCCGAAGGCCATCGTCGCCATCGAGAGCGTCAGCGCAATACGGTTTTTGAGGCGGCGACGCGCCTGCATTTTGCGGCGAGATTCAGCCAGCGCCGCAGTGGTTTGCATTTCAACCATAGCCATTA > NC_000913/3909170‑3909440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |