| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,909,311 | Δ774 bp | [pstA]–[pstC] | [pstA], [pstC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3909311 | 3910084 | 774 | 27 [0] | [0] 28 | [pstA]–[pstC] | [pstA], [pstC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3909310 | 0 (0.000) | 27 (0.670) | 24/270 | 0.7 | 100% | coding (129/891 nt) | pstA | phosphate ABC transporter permease |
| ? | NC_000913 | 3910085 = | 0 (0.000) | coding (313/960 nt) | pstC | phosphate ABC transporter permease | |||||
ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909944‑3910227 | cttaaccgcccgcgacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaaccgcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccaggc < 2:349932‑M2/2‑1 (MQ=255) accagcccgccacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCa < 2:572870‑M2/5‑1 (MQ=255) acagcccgctacccgccagagcggtcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCaa < 1:643416‑M2/6‑1 (MQ=255) cccgctacccgccagagcgttcgccagaccaccaccttccgtactgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgctgggggacatcgaaatccagaccagccagGGGCGagcac > 1:575422‑M2/134‑141 (MQ=255) cgctacccgccagagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCtcag < 2:687720‑M2/12‑1 (MQ=255) agagcgttcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccggcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAgg > 2:9040‑M2/121‑143 (MQ=255) ggggttcgccagacacccgcctgcgctattgggcggcggcgtgatgtcagtgaacagggccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGc < 2:523408‑M2/25‑1 (MQ=255) tcgccagaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATAc < 2:559093‑M2/30‑1 (MQ=255) ccagacccccaccttccgtatggggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGa < 2:466834‑M2/33‑1 (MQ=255) agaccaccaccttccggattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaacatccagatcagccagGCGCAAGCGCAGTCAGgaaccgggcgcgacgggca > 1:564427‑M2/109‑134 (MQ=255) gaccaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcggtaccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGACACCGAAAc > 1:357226‑M2/108‑143 (MQ=255) accaccaccttccgtattgggcggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgcgtgatggtggacattaaaagccagctcagccagGCGCAGGCTCAGTCAGGACCAGGGCGataccgcgacg > 2:195502‑M2/107‑138 (MQ=255) ggcggcgtcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGACCagcagc > 2:514962‑M2/85‑143 (MQ=255) tcatttcagtgaacagcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGGTCAGCCGCGCGATaa > 1:73371‑M2/78‑143 (MQ=255) agcgccagcgccataccgtcgataccgcgagtgatggtggccattaaaatccagatcagccagGCGCCAGCGCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAGGccacccac > 2:246871‑M2/64‑143 (MQ=255) agcgccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAAc < 2:27196‑M2/80‑1 (MQ=255) gccagcgacataccgtcgataccgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACACGGCGATACCGAAACTCACCGGGACGGCGCTCAGCAGCGCGATAAACGAAGCCACCAccgcc > 1:183705‑M2/61‑141 (MQ=255) cgcgagtgatggtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAGCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGccc > 1:651714‑M2/39‑143 (MQ=255) tgatggtggacattaacatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 2:193784‑M2/111‑1 (MQ=255) cgatggtgcacagtaacagccagatcagccagGCGCAAGCGCAGTCAGGAGCAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGa < 1:862‑M2/111‑1 (MQ=255) gtggacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGCGCAGGGCGATACCGGCCCTCACCGGGACGGCGATCAGCAGCGCGATAAGCGAAGTCACCAACGGACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 2:272435‑M2/116‑1 (MQ=255) gtggacattaaaagccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCg < 2:656913‑M2/116‑1 (MQ=255) gacattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTc > 2:519480‑M2/25‑143 (MQ=255) cattaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCgg > 2:362207‑M2/23‑143 (MQ=255) actaagagccagatccgccagGCGCAAGCTCAGTCAGGCACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGt < 1:72047‑M2/122‑1 (MQ=255) ttaaaatccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTg < 2:694599‑M2/123‑1 (MQ=255) ccagatcagccagGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCa < 2:663545‑M2/130‑1 (MQ=255) gcgcAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGAACAGCAGCGCGATAAACGAAGTCACCCACGTACCGTAGATCGCCACCAGCGCCCCGAAGAAAACGTTCGGCGCCTCCCACCCGTTGGTCCAt > 1:9398/1‑143 (MQ=255) | ACATGATATTGCCGACCGGCTCCTGAAAGTAAACGGCGAACAGCGGCGCAAAGATAAACAGGCCCCACATGCCGTAAACGATACTTGGAATGGCTGCCAGCAGCTCAATGGCGATACCCAGCGGGCGTTTCAGCCAGCCAGGCGCAAGCTCAGTCAGGAACAGGGCGATACCGAAACTCACCGGGACGGCGATCAGCAGCGCGATAAACGAAGTCACCAACGTACCGTAGATCGGCACCAGCGCCCCGTAGATATCGTTCGGTGCATCCCACTCTTTGGTCCAT > NC_000913/3909944‑3910227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |