Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979269 1979278 10–776 63 [1] [0] 64 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785021 (0.010)57 (0.890) 43/266 0.5 99.2% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979139‑1979421
                                                                                                                                            |                                                                                                                                              
gtcttgtcacgtagctaagatttttcgtaaatcgacgcaagtttactcgtcactacactctcatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                              <  2:776640‑M2/3‑1 (MQ=255)
  ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  1:9272‑M2/5‑1 (MQ=255)
  ctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa                                                                                                                                            <  1:772686‑M2/5‑1 (MQ=255)
             tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACtttt                                                                                                                                 >  2:289592‑M2/128‑143 (MQ=255)
               taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcggttttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt                                                                                                                               >  1:746245‑M2/126‑143 (MQ=255)
               taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatacatgTATACGTCATACttttgt                                                                                                                               >  1:442108‑M2/126‑143 (MQ=255)
                 agatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTACTACttttgttt                                                                                                                             >  2:1080492‑M2/124‑143 (MQ=255)
                      tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                        <  1:119272‑M2/25‑1 (MQ=255)
                        tcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaatcctgcgtgatgcagatcacacaaaacactcaattacttaacatacatgTATAAGTCATACTTTTGTTTTGGgtgt                                                                                                                      <  2:77948‑M2/27‑1 (MQ=255)
                           taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                   >  2:454184‑M2/114‑143 (MQ=255)
                           taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                   >  1:132009‑M2/114‑143 (MQ=255)
                            aaatcgacgctactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcgtatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  2:438608‑M2/31‑1 (MQ=255)
                            aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  1:643800‑M2/31‑1 (MQ=255)
                            aaatcgacgcaactggactcgtcactacacgcacatagaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacattcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                  <  2:748648‑M2/31‑1 (MQ=255)
                              atcgacgcacctgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                                <  2:1105107‑M2/33‑1 (MQ=255)
                              atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                                >  2:1173776‑M2/111‑143 (MQ=255)
                                     caagtgcactcgtcactacacgcacatacaacggaggggggctgcgattttcaatagtgcgtgatgcatttcgcatagaccatttaattacttattataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                         <  2:1032433‑M2/40‑1 (MQ=255)
                                      aactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTa                                                                                                        >  1:342075‑M2/103‑143 (MQ=255)
                                      aactgtactcgtcactacacgcacatacaacggaggggggctgcgattctcaataatgcgtgatgcagatcacacaaaacactcagtgacgtaccataaattTATAAGGCCGACTTCTGTTATGAGTCTATCTCAATCTGTTa                                                                                                        >  1:546989‑M2/103‑143 (MQ=255)
                                         tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                     >  1:491119‑M2/100‑143 (MQ=255)
                                         tgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                     >  1:649791‑M2/100‑143 (MQ=255)
                                         tgtactcgtcactacacgcacatacaacggaggcgggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTAGGTGTATTTCAATCTGTTaaaa                                                                                                     >  2:7100‑M2/100‑143 (MQ=255)
                                         tctactcgacactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGACATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa                                                                                                     <  2:1112078‑M2/44‑1 (MQ=255)
                                                     tacaggcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaactacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                         <  2:764946‑M2/56‑1 (MQ=255)
                                                          gcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATACTTTTGATTTGGGTGTCTTTCAATCTGGTAAAAAGTTTTTcgctacgcta                                                                                    >  2:268260‑M2/83‑143 (MQ=255)
                                                              atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                <  1:686114‑M2/65‑1 (MQ=255)
                                                              atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTATTGGGTGTATTTCAATCTGTTAAAAAGtttttcgctacgctcaaac                                                                                >  2:402103‑M2/79‑138 (MQ=255)
                                                                 caacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCCATCTGTTAAAACGTTTTTCGCTACGATagcaagca                                                                             >  1:97375‑M2/76‑143 (MQ=255)
                                                                 caacggaggggggctgcgattttcaataatgcgtgacgcagatcacacaaaacactcaattacttaacataaatgTATCAGTCATACTTTTGTTCGGGGTGTATCTCCATCTGTTAACAAGAGTTTCGCTACgctcgcaaacg                                                                             >  1:97306‑M2/76‑140 (MQ=255)
                                                                  aacggaggggggctgcgattttcaataatgcgtgctgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGATGTATTTCAATCTGTGAAAAAGTTTTTCGCTACCctagcacgcca                                                                            >  2:1029106‑M2/75‑141 (MQ=255)
                                                                  aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTCCGCTAgcaagcaa                                                                            >  1:467972‑M2/75‑143 (MQ=255)
                                                                    cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                          <  2:489455‑M2/71‑1 (MQ=255)
                                                                    cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGGATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                          >  1:741467‑M2/73‑143 (MQ=255)
                                                                     ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatcTATAAGTCATACTTTTGTTTTGGGTGTATTTCAGTCTGTTAAAAAGTTTTTCGCTACGCTCGCAAgcaaaca                                                                         >  1:82768‑M2/72‑141 (MQ=255)
                                                                     ggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTCTTTCGCTAGGCTAGCAAGCaaaaa                                                                         >  2:733865‑M2/72‑143 (MQ=255)
                                                                      gaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                        <  1:1173776‑M2/73‑1 (MQ=255)
                                                                         gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaa                                                                     >  2:287591‑M2/68‑143 (MQ=255)
                                                                          agggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTTTTCGCTACGCTAGAAAGCAAAAATGaaa                                                                    <  2:913324‑M2/77‑1 (MQ=255)
                                                                             gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatagatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                                 <  2:584177‑M2/80‑1 (MQ=255)
                                                                               tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                               >  1:506282‑M2/62‑143 (MQ=255)
                                                                                 cgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaat                                                             <  1:1011897‑M2/84‑1 (MQ=255)
                                                                                          ataacgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                    <  1:187487‑M2/93‑1 (MQ=255)
                                                                                                      gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcgc                                        >  1:560551‑M2/39‑143 (MQ=255)
                                                                                                         gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                     >  2:674897‑M2/36‑143 (MQ=255)
                                                                                                         gatcacacaaaacactcaattacttaacataaatgTATAAGACATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                     >  2:1019611‑M2/36‑143 (MQ=255)
                                                                                                          atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                    >  2:330485‑M2/35‑143 (MQ=255)
                                                                                                             acacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                                 <  1:728483‑M2/112‑1 (MQ=255)
                                                                                                               acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCCAGCAAAAATGAACCAGGAATAATAGAAATGGGATGTTGCGCACAGTCaaa                               >  1:678385‑M2/30‑143 (MQ=255)
                                                                                                                caaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                              >  1:605384‑M2/29‑143 (MQ=255)
                                                                                                                 aaaactcttaattttttaatataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACATGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                             <  2:82768‑M2/116‑1 (MQ=255)
                                                                                                                  aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                            >  1:15771‑M2/27‑143 (MQ=255)
                                                                                                                   aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGGTGCGCGcaatcaagagtg                           >  2:828707‑M2/26‑138 (MQ=255)
                                                                                                                          aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAACAATGACACAGGAATAATCGAAATGGAACATTGCGCACAGTCAAAATAACTGACCg                    >  2:190936‑M2/19‑143 (MQ=255)
                                                                                                                          aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGACACAGCAATCATCGAAATGGGATGTTGCACACAGTCAAaataactaacag                    >  1:239998‑M2/19‑141 (MQ=255)
                                                                                                                          aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                    >  1:4352‑M2/19‑143 (MQ=255)
                                                                                                                           agtagttaacataaatgTATGAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGt                   <  2:232703‑M2/126‑1 (MQ=255)
                                                                                                                                ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAaata              >  1:1119537‑M2/13‑143 (MQ=255)
                                                                                                                                     ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatcat         >  1:292648‑M2/8‑143 (MQ=255)
                                                                                                                                         atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc     <  1:330485‑M2/140‑1 (MQ=255)
                                                                                                                                         atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc     <  2:342075‑M2/140‑1 (MQ=255)
                                                                                                                                          tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAGCGTAAATAATCATCTGCt    >  1:196793‑M2/3‑143 (MQ=255)
                                                                                                                                          tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt    <  1:544509‑M2/141‑1 (MQ=255)
                                                                                                                                            tataAGTCATACTTTTGTTTTGGGTTTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGAAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  <  2:25810/143‑1 (MQ=255)
                                                                                                                                            tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCtat  >  1:675504/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                              
CCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTAT  >  NC_000913/1979139‑1979421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: