New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 2375833 | 3 (0.060) | 49 (1.020) | 41/274 | 0.1 | 94.4% | coding (128/963 nt) | menC | O‑succinylbenzoyl‑CoA synthase |
? | NC_000913 | 2514275 = | NA (NA) | intergenic (+33/‑54) | nupC/insL1 | nucleoside (except guanosine) transporter/IS186 transposase |
AATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2375689‑2375833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGG > NC_000913/2514275‑2514416 AATGCACCGCTTACGCCGACGGCCACTGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTC < 1:616623/143‑1 ACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGCCTGAAGCCCGGCCGTGGGGCGATCGCCCAgc > 2:726317/1‑141 AGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGCTTCCTGACTGAAGCCCGGCAGTGGGGAGCTCTCCCATAcg > 2:675452/1‑141 ACGCCGAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAAGCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCCCACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTA < 1:26345/143‑1 CCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCTCAAGCGCTACCT > 2:310466/1‑143 AAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAA < 2:376332/143‑1 GCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTCAGGG > 2:840245/1‑143 CACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTT > 1:241898/1‑143 CGGAAAGCCTCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCCCCCATAAGCGCTAACTTAAGGGTTGT < 1:376345/143‑1 AAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCCGTGGGGCGATCTCCCATAACCGCTAACTCAAGGGTTGTGGT > 2:290310/1‑143 cGGCATCTGCGGTAGCTCGCAATCGCCGGCCAGCCAGTTATTTACCCAGGCAAGCAGCACGCTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTA < 1:825966/142‑1 AGGTATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCGTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTA < 1:601588/143‑1 GCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTCTCCTGACTGCAGCCCGGCGGTGCGGAGATCTCCCATAAGCGCGAACTTAAGGGacgccgcagt > 1:523553/1‑133 CATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA < 1:559977/143‑1 CATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA < 1:560244/143‑1 CATCTGCGGTAGCTCGCAATCGCCGGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTA < 2:609060/143‑1 ggtaccgcactATCGCCTGCCAGCCTGTTATTTACCCAGGCAAGCAGCACACTTGGCGCCTCTTGCCACGTTTCCTGACGGAAGCCCGGCAGTGTGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA < 1:395176/132‑1 AATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA > 2:99793/1‑143 TCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTGACG > 1:407362/1‑143 ccgGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTGCCCAGGCTTCCTGACTGAAGCCCGGCCGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGCTAGTACGCCTGACACGATCTACCATGC > 1:850438/4‑143 ctctctGCCAGTTGTTCCCCCAGGCAAGCAGCACACTTTGCGGCTCTTCCCAGGTTTGCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC < 1:777776/137‑1 CCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGCTGTGGTATTACGCCTGATATGATTTAACGTGCCGAT < 2:558009/143‑1 AGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA > 2:131097/1‑143 CCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT < 2:691655/143‑1 TACCCATGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC < 2:861035/143‑1 CCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATATGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATAGAGTTTAACGTGCCGGTGAATTACTCTCGCGgt > 1:823423/1‑141 AGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTCTTCCGCCTGATATGATTTCACGTGCCTATGAATTACTCTCACGATAA > 2:767726/1‑143 tCAAGCAGCACACCTTGCGCCTCTTCCCAGGCTTCCTGACTGAAGGCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGATAACT < 2:222965/142‑1 GCAAGCAGCACACTTTGCGCCTCTTGCCAGGTTTCCTGCCTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACT < 1:771913/143‑1 GCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTCACTTAAGGGTTGTGGTAGTACGCCTGCTATGATCTAACGTGCCGCTGAATTGCTCTCACGATGACTGGTC > 1:120549/1‑143 caccgCACTTGGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCA < 1:481971/138‑1 ACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA > 2:111583/1‑132 ACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA < 1:111583/132‑1 CTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTC < 2:658725/143‑1 TGCGCCTCGCCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTAGTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG < 2:81867/143‑1 cgTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCA < 1:6639/141‑1 CTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCAT < 2:741703/143‑1 TCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATA > 1:639727/1‑143 tgcGGTGTCCTGGCTGAAGCCCGGCAGGGGGGCGATCGCCCATAAGCGCTCACTTAAGGGTTGTGGTATTACGCTTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGT < 1:767712/140‑1 CAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTA < 2:558425/143‑1 CAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTAGTA > 1:126526/1‑143 TTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCC < 2:841343/143‑1 CTGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGCCAGCGATGCTGGCCGGTATTGGTAAGCaagga > 2:380981/1‑138 TGACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAga > 2:360057/1‑141 ACTGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAA < 2:631548/143‑1 TGAAGCCCGGCAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGTCCCATATGGGTAAGCCCGAAGAACT > 2:285698/1‑143 CAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCG < 2:241898/143‑1 CAGTGGGGAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGACGCTGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATGTTGGTAAGCCAGACGAACTGGctccatcg > 2:33950/1‑135 GAGATCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATCGGTAAGCCCGAAGAACTGGCTACTCCGGCACGca > 1:256295/1‑141 CTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACGCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCAGACGAACTGGATACTTCCGCACGAAATGCg > 1:48847/1‑142 TCCCATTAGCGCTTAGTTGAGGGTTGCGGTTGTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG < 1:462577/143‑1 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG > 2:49956/1‑143 TCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATGCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAGTGCCG > 2:382039/1‑143 CCATCAGCGCTAACTTAAGCAATGTATTATTACGCCTAATATGCTTCGACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGG < 2:537847/143‑1 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGG > 1:455160/1‑143 CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGG > 2:599093/1‑143 CATAAGCGCTGACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGG < 1:238620/143‑1 CATAAGCGCTAACTTACGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGG < 1:598778/143‑1 AATGCACAGCTTACGCCAAAGGCCACGGAAGGCATCTGCGGTAGCTCGCAATCGCCTGCCAGCCAGTTATTTACCCAGGCAAGCAGCACACTTTGCGCCTCTTCCCAGGTTTCCTGACTGAAGCCCGGCAGTGGGGAGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2375689‑2375833 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGG > NC_000913/2514275‑2514416 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |