Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 417,075 (TCATAAATCTG)2→1 intergenic (‑123/‑57) sbcD ← / → phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 417075 417085 11 50 [0] [0] 50 sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4170740 (0.000)48 (1.050) 42/260 0.1 100% intergenic (‑122/‑68) sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR
?NC_000913 417086 = 0 (0.000)intergenic (‑134/‑56) sbcD/phoB exonuclease, dsDNA, ATP‑dependent/response regulator in two‑component regulatory system with PhoR

GATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGC  >  NC_000913/416944‑417226
                                                                                                                                              |                                                                                                                                            
gaggtgtgaaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctga                                                                                                                                              <  1:253436‑M2/1‑1 (MQ=255)
     gtgaaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCAt                                                                                                                                         >  1:131306‑M2/138‑143 (MQ=255)
       gaaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgcaatttgcttttttctgcgccacggaaatcaataacctgaagatatatgcgacgagcttttcataaatctgACGCGTaa                                                                                                                                       >  1:282943‑M2/136‑143 (MQ=255)
       gaaggatgcgcataacggttccctggcgaaaaaacatggccgcgattatacccaaacagatgtgcaatttgcttttttctgcgccccggaaatcaataacctgaagatatctgcgacgagctgatcataaatctgCCGAATaa                                                                                                                                       >  1:240593‑M2/136‑143 (MQ=255)
        aaggatgcgcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCAtaac                                                                                                                                      >  2:621019‑M2/135‑142 (MQ=255)
           gatgctcataacggtttcctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaagcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGAc                                                                                                                                   <  2:247330‑M2/12‑1 (MQ=255)
               cgcataacggttccctggcgaagaagcatgggcgcgattatacccaaacagatgtgccatgtgcttttttctgcgccacggaaatcaataacctgaagatacgtgcgacgagattttcagaaatctgACGCATAATGAcgtgg                                                                                                                               >  1:536653‑M2/128‑141 (MQ=255)
                gcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacgggaatcaataacctgaagatatgtgcgacgagcttttcataaatctgGCGCATAATGACGTCGc                                                                                                                              >  2:830615‑M2/127‑143 (MQ=255)
                gcataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGc                                                                                                                              <  1:451932‑M2/17‑1 (MQ=255)
                  ataacggttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCAt                                                                                                                            >  1:193809‑M2/125‑143 (MQ=255)
                        gttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGa                                                                                                                      <  2:38226‑M2/25‑1 (MQ=255)
                         ttccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgtcttttgaaggcaactacgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGAt                                                                                                                     <  2:196213‑M2/26‑1 (MQ=255)
                          ttcctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATc                                                                                                                    <  1:310367‑M2/27‑1 (MQ=255)
                          tccggggggaaaaagcatgggcgcgactatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATc                                                                                                                    <  2:317464‑M2/27‑1 (MQ=255)
                          tccctggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATc                                                                                                                    <  2:625839‑M2/27‑1 (MQ=255)
                             ctggcgaaaaagcatgggcgcgattatacccaaacagctgtgccatttgcttttttctgcgccacggaaatcaataacctgcagctatgtgcgacgagcttttcataaatctgACGCATAATGACGTAGCATCAatcatgtca                                                                                                                 >  1:555577‑M2/114‑139 (MQ=255)
                              tggcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgcgcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGaaa                                                                                                                >  2:233943‑M2/113‑143 (MQ=255)
                                gcgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAAcc                                                                                                              <  1:845305‑M2/33‑1 (MQ=255)
                                 cgaaaaagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGAACGCGACCt                                                                                                             >  1:457230‑M2/110‑143 (MQ=255)
                                      aagcatgggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCtattta                                                                                                        <  1:591400‑M2/39‑1 (MQ=255)
                                             ggcgcgattatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTAGTTATTacaac                                                                                                 >  2:534779‑M2/98‑143 (MQ=255)
                                              gcgcgcttatacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTacaaca                                                                                                <  2:805771‑M2/47‑1 (MQ=255)
                                              gcgcgattatacccaaacagatgtgccatttgctttttgctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTacaaca                                                                                                >  1:561346‑M2/97‑143 (MQ=255)
                                              gcgcgattatacccaaacagatgtgccatttgctttttgctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTacaaca                                                                                                <  2:565480‑M2/47‑1 (MQ=255)
                                                 cttttatactcatacagatgttccatttgcttttttctgcgccacgtaaatcaataacctgaagatatgtgcgacgagcttttcataaatcttACGTATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAggg                                                                                             <  1:34243‑M2/50‑1 (MQ=255)
                                                       tacccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATc                                                                                       <  2:170320‑M2/56‑1 (MQ=255)
                                                         cccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCAt                                                                                     <  2:452515‑M2/58‑1 (MQ=255)
                                                          ccaaacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATg                                                                                    <  2:650813‑M2/59‑1 (MQ=255)
                                                             aacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCg                                                                                 >  2:860771‑M2/82‑143 (MQ=255)
                                                             aacagatgtgccatttgcttttttctgcgccacggaaatcaataacctgaagagatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCACCCTATTTCTTACAACCGGGCGAATCATGGCg                                                                                 >  2:39700‑M2/82‑143 (MQ=255)
                                                                     tgccatttgcttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTAt                                                                         >  1:155647‑M2/74‑143 (MQ=255)
                                                                       ccatttgcttgtttctgcgccacggaaatcaataacctgaatatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTc                                                                       <  1:578681‑M2/72‑1 (MQ=255)
                                                                               ttttttctgcgccacggaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCGATTTATTACAACAGGGCAAATCATGGCGAGAcggcttctcggccga                                                               >  1:2483‑M2/64‑136 (MQ=255)
                                                                                               gaaatcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCaa                                               <  1:534779‑M2/96‑1 (MQ=255)
                                                                                                  atcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTc                                            >  2:395587‑M2/45‑143 (MQ=255)
                                                                                                   tcactaacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACATCAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTcg                                           <  2:384729‑M2/100‑1 (MQ=255)
                                                                                                   tcaataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTcg                                           >  2:805127‑M2/44‑143 (MQ=255)
                                                                                                    caataccctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTcgc                                          <  2:334014‑M2/101‑1 (MQ=255)
                                                                                                     aataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTcgcg                                         >  1:658199‑M2/42‑143 (MQ=255)
                                                                                                      ataacctgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTAGTAGAAGATGAAGCACCAATTCGCGa                                        >  1:49681‑M2/41‑143 (MQ=255)
                                                                                                            tgaagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGt                                  <  2:491608‑M2/109‑1 (MQ=255)
                                                                                                              aagatatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTTGCGAAATGGTCt                                >  1:566798‑M2/33‑143 (MQ=255)
                                                                                                                  tatgtgcgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTGGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCtt                            <  1:474649‑M2/115‑1 (MQ=255)
                                                                                                                      tgcgacgagcttttcgtcaagctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACACCAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTg                        <  2:595024‑M2/119‑1 (MQ=255)
                                                                                                                        cgacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCGGCTCCGTGCt                      >  1:855504‑M2/23‑143 (MQ=255)
                                                                                                                         gacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAACTCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGATCCAATTCGCAAAATGGTCTGCTGCGtgcac                     >  1:484603‑M2/22‑141 (MQ=255)
                                                                                                                         gacgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTGTTCTGGTCGTAGAAGATGAAGCTCCAATTCACGAAATAATCTACTTCGTGCTc                     >  2:245005‑M2/22‑143 (MQ=255)
                                                                                                                          acgagcttttcataaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCTAATTCGCGAAATGGTCTGCTTCGTGGTCg                    >  2:761978‑M2/21‑143 (MQ=255)
                                                                                                                                      taaatctgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGAGGTATTCTTGTCGTAGAAGATGAAGCTCCAATGCGCGAAATGGTCTGCTTCGTGCTAGGACAAAATGGCt        >  1:196089‑M2/9‑143 (MQ=255)
                                                                                                                                            tgACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGc  <  1:860771‑M2/141‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                            
GATGCGCATAACGGTTCCCTGGCGAAAAAGCATGGGCGCGATTATACCCAAACAGATGTGCCATTTGCTTTTTTCTGCGCCACGGAAATCAATAACCTGAAGATATGTGCGACGAGCTTTTCATAAATCTGTCATAAATCTGACGCATAATGACGTCGCATTAATGATCGCAACCTATTTATTACAACAGGGCAAATCATGGCGAGACGTATTCTGGTCGTAGAAGATGAAGCTCCAATTCGCGAAATGGTCTGCTTCGTGCTCGAACAAAATGGCTTTCAGC  >  NC_000913/416944‑417226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.