| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1113417 = | NA (NA) | 4 (0.090) +GATTTTGCGTTTGTCATCAGACTT |
4/234 | 6.5 | NA | noncoding (1/98 nt) | RIP97 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP97 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 4470517 | NA (NA) | intergenic (+195/+11) | mgtA/ridA | magnesium transporter/enamine/imine deaminase, reaction intermediate detoxification | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTT > NC_000913/4470375‑4470654 | tGTCCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGCTATCAT‑GCCCGGA‑tt < 2:736596/143‑1 (MQ=37) gcacATGCCTGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑ttt < 1:824889/140‑1 (MQ=255) gTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑ttt < 1:594605/143‑1 (MQ=255) cATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCa < 1:262430/143‑1 (MQ=255) tGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCAAGTAGGACTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTGATCAGACTTAATCGGGGC‑ATGATAGCACGGA‑tttgaatc > 1:41338/1‑138 (MQ=37) gcggcgTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAg < 2:871080/143‑1 (MQ=255) cggcgTAAAGGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATGACGTAGGCCTGATAAGCGTAGCGCAGCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGc < 1:413850/143‑1 (MQ=255) aaaGGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGcgtcgag < 2:162755/143‑2 (MQ=255) aaTGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAAc < 2:742338/143‑1 (MQ=255) gCCTTAGCCGGCCATTAAAGTCATGATATTGCAGTAATCACGTCGGCCTGTTACGCTTTGCGCATCAGTCGATTTTGCGTTTGTCATCAGACTTAATTCGGTC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGc < 2:557190/143‑1 (MQ=255) ccTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGGTTAGCGACGAACAGCg > 1:197022/1‑143 (MQ=255) ttATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGAt < 1:418303/143‑1 (MQ=255) ttATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGAt > 1:829489/1‑143 (MQ=255) tATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATc > 1:722097/1‑143 (MQ=255) tCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGc > 1:32143/1‑143 (MQ=255) ggCCAACAAATTCAATAAATTGAAGGAATCACTTAACCCTTATAAGCGTAGCGCATCAGGCGATTATGCGTTCGTCATCAGAGTTAATCCGGGC‑ATGATAGCCCGGA‑TTCCCGACAAGAATAGCGACGAACAGCGATCGCGTc > 2:765094/1‑143 (MQ=37) caacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAt < 1:42152/143‑1 (MQ=255) caacaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAt < 1:50865/143‑1 (MQ=255) caacaaAGTCAATAAATTGCAGGAATCACGTAGGCCGGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAGTCAGGGC‑ATTGTAGCCCGGA‑TTTCCATCGGGATTAGCGACGAACAGCGATCGCTTCGAt < 2:912556/143‑1 (MQ=37) acaaATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGAtct < 1:195268/143‑1 (MQ=255) gttaataggttGCAGGAATCACGTAGGCGTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGCTAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCCATc < 2:690806/134‑1 (MQ=38) aaTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCGATCAAGATTAGCGACGAACAGCGATCGCATCGATCTCAACCTTc > 2:109721/1‑143 (MQ=255) aTAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCAACCAAGATTAGCGACGAACAGCGATCGCTTCGACCTCAATCTTCa > 1:524267/1‑143 (MQ=255) tAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCAc < 2:629101/143‑1 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTCTCg > 2:641815/1‑143 (MQ=255) aGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCAGGGT‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCg > 2:813064/1‑143 (MQ=255) gAATCACGTAGGCCTGAGAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCAGCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGc < 1:864120/143‑1 (MQ=255) tCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGCTCTCAATCTTCACGTCTTTCGGCAGa > 1:492220/1‑143 (MQ=255) aCGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACg > 1:62756/1‑143 (MQ=255) cTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACtt > 1:147095/1‑143 (MQ=255) aTAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTACTCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTCGCGACGAACAGCGAGCGCTTCGATCTCAATCTTCACGTCTCTCGGCAGACGGGCAACTTCaa > 2:176499/1‑143 (MQ=255) tAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc < 1:653999/143‑1 (MQ=255) aaaGCGGAGCGCATCAGGCGAGTTGGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAAc < 1:99958/142‑1 (MQ=255) aGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAAACAGAAC‑AAAATAGTGCGGG‑TTGCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGc < 1:211823/143‑1 (MQ=255) gcATCAGGCGATTTCGGGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGt < 2:901123/143‑1 (MQ=255) gaTCAGGCGATTTTGCGTGTGTCAGCAGACGTAGTCCGGGC‑ATGATAGGCCGGA‑TGTCCAGCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTGTCGGCAGACGGGCAACTTCAACGCAAGAACGTg < 2:615021/142‑1 (MQ=255) aTCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGc > 2:779096/1‑143 (MQ=255) cAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCACGAACGTGCCg > 1:356110/1‑143 (MQ=255) cAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TGTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGGCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCg < 2:931391/143‑1 (MQ=255) tttGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTg < 1:628607/143‑1 (MQ=255) tGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATGAGCGACGCACAGCGATCGCTTCGATATCAACCTTCACGTCTTTCGGCAGCCGGGCCACTGCAACGCAAGAACCTGCCcggccgacggc > 2:113525/1‑135 (MQ=255) gCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCg < 1:748682/143‑1 (MQ=255) tttGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAAAACGTACCGGGGAGGTGGCGTtg > 2:259581/1‑143 (MQ=255) catcaGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTtgggatc > 2:472128/1‑138 (MQ=255) atcaGCCTTCAGCCGGGC‑ATGATACCCCGTA‑TTTCCCTCAAGCTTAGCGACGAGCAGCGGTGGTTTCGCTCTCAATCCTCACGTCGTTCGGCGGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCg < 2:279693/143‑1 (MQ=255) tcaGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCACCTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTCGTGTTCgg > 2:612628/1‑143 (MQ=255) tcaGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGACGGTGGCGTTGTGTTCgg > 2:444930/1‑143 (MQ=255) gcttcttCCGGGC‑ATGATAGCCCGGA‑TGTCCATCAAGACTAGCGACGGACGTCGATCGCTTCGATCTCAATCTTCACGTCGTTCGGAAGACCGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTgaa < 2:609143/137‑1 (MQ=255) gctgcGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGTCGAACAGCGATCGCTTCGTTCTCCATCTTCAGGTCTTTCGGCCGGCGGGCAGCTTCGGAGCGAGACCGGGCCGGGAAGGTGGCGTTGTGTTCGGTGaagaag < 2:375146/139‑1 (MQ=255) aagccGGGG‑ATGACAGCCCGGG‑TGTCAGTCAAGCTTGGCGGCGAACAGCGAGCGCTTCGATCTCAATCTTGCGGGCGTGTGGCAGACGGGCAACTTCAAGGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGaagtag < 2:894234/140‑1 (MQ=255) aaTCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGaagaag < 1:440666/143‑1 (MQ=255) agccGGGG‑ATGAAGGCGCGGA‑TTTCCAGCAAGATGAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAgg < 1:608209/141‑1 (MQ=255) tCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCCATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGc > 1:586187/1‑143 (MQ=255) cGGGC‑ATGATAGCCCGGATTTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTTGGTgaagacgcca > 1:671087/1‑138 (MQ=255) gC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTATTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGGTGGGTGCGGCGAAGAAGGCTTCGt > 2:6078/1‑143 (MQ=255) aTGGTAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTaa < 2:735431/143‑1 (MQ=255) aTAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCCATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTg < 1:550825/143‑1 (MQ=255) tAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAGGTgg > 1:376736/1‑143 (MQ=255) ccGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGtg > 1:844899/1‑142 (MQ=255) cGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCCTCGTAAGTGGCGttt > 2:148017/1‑143 (MQ=255) | TGTTCATGCCGGATGCGGCGTAAATGCCTTATCCGGCCAACAAATTCAATAAATTGCAGGAATCACGTAGGCCTGATAAGCGTAGCGCATCAGGCGATTTTGCGTTTGTCATCAGACTTAATCCGGGC‑ATGATAGCCCGGA‑TTTCCATCAAGATTAGCGACGAACAGCGATCGCTTCGATCTCAATCTTCACGTCTTTCGGCAGACGGGCAACTTCAACGCAAGAACGTGCCGGGAAGGTGGCGTTGTGTTCGGTGAAGAAGGCTTCGTAAGTGGCGTTT > NC_000913/4470375‑4470654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |