| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 8 (0.150) | 40 (0.850) | 31/250 | 0.5 | 79.1% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 14 (0.300) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209481‑1209759 | atggttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGttt < 1:846745‑M2/5‑1 (MQ=255) ttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaa < 1:638910‑M2/11‑1 (MQ=255) cTTTGCCGGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa < 2:777740/143‑1 (MQ=255) ccacccccactgaatgatgactgcttgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAAt < 2:465820‑M2/21‑1 (MQ=255) cacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagatatgaacccagtgcgtcctaatgtagccgttgctgcattgagttttgctccctctctcaaaccaaCGTTTATGAAAAAGAAGAAATa > 1:495249‑M2/122‑143 (MQ=255) acccccactgaatgattcctgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacccaCGTCTCTGAACGTGAAGCAATaa > 2:86719‑M2/121‑143 (MQ=255) cccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc < 2:570331‑M2/24‑1 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAACTGAAGAAATAACa > 1:158784/1‑143 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGAGCCTTCCCCCACACCAACGCTTACGAACAAGAACAAAAAACa > 1:161519/1‑143 (MQ=255) cccactgactgattactgattgctgaatacccccactcataatcggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa < 2:105908‑M2/26‑1 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTCATGAAAATGAAGAAATAACAAGCAAATg > 2:640297/1‑143 (MQ=255) gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcat > 2:930426/1‑143 (MQ=255) ttactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccatCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc < 2:108920‑M2/38‑1 (MQ=255) ctccatacccccattcctaaccggtacagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATTACAAGCAAATGGCATCATTCCTGCtt < 1:42735‑M2/48‑1 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt > 2:176688‑M2/95‑143 (MQ=255) aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttagtgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAACAAATGGCACAATTCCTGcttttg > 2:293774‑M2/93‑142 (MQ=255) taccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTccc > 1:613544‑M2/91‑143 (MQ=255) accaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa < 2:347760‑M2/54‑1 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg < 2:392299‑M2/57‑1 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg > 2:741280‑M2/87‑143 (MQ=255) accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg > 1:852874‑M2/87‑143 (MQ=255) ccaatcataaccggtatagctatgcaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGCAAATGAAGAAATAACAAGCAAACGGCATCATTCCTGCTTTTAccagcag > 2:501577‑M2/86‑140 (MQ=255) cATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 1:711055/143‑1 (MQ=255) cagccagcCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt < 1:514693/143‑1 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:609793‑M2/65‑1 (MQ=255) aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctgcgtctcgcaaaccaaCGTTTATGAAAATGAAGACATAACAAGCAGATGGCATCATTCCTGCTTTTACCAGGGGGATTTCAc > 1:586687‑M2/78‑143 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa < 1:350053/102‑1 (MQ=255) cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa > 2:350053/1‑102 (MQ=255) tatagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgagttttgctccttcccccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCtt < 2:649470‑M2/72‑1 (MQ=255) tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGACATAACAAGCAAATGGCATCCTTCCTGCTTTTCCCAGGGCGCTTTAACCTCCtt > 1:98561/1‑143 (MQ=255) taactactataccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttcccccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTCTTACCAGGGGGATTTAACATgcttct > 2:378676‑M2/70‑141 (MQ=255) gctatgaaaccggtgcgtcctaatgtagccgttgctgcatggagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCGTATTg > 1:503024‑M2/68‑143 (MQ=255) ctatgaaaccggtgcgtcctaatgtaggcgttgctgcattgagttttgctccttctcgcaaaccaaCCTTTATGAAAATGAAGAAATAACAAGCAAATGGCGTCATTCCTGCTGTTACCAGGCGGATTGACCAAGCGTATggg > 2:58661‑M2/67‑143 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc < 2:431210‑M2/78‑1 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCt < 1:6662‑M2/79‑1 (MQ=255) ggaggcggtgcgtgctaatgtagccgttgctgcagtgagttttgcgccttctctcagaccatCGGTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACTAGGGGGATTTAACATGCTTATTGGCTAt < 2:533809‑M2/81‑1 (MQ=255) tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTCTACCAGGGGGATTTAAAATGCTTATTGGCTATGTAcgc < 2:158784/143‑1 (MQ=255) ggttcgtcctcatgtagcagctgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:763684‑M2/87‑1 (MQ=255) gggggagcgtaaggtagccgttgctgcatcgagttttgctccttctcccaaaccaaCGTGTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCGTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 1:851792‑M2/87‑1 (MQ=255) ggggcgtcctaatgtagccgttgctgcattgagttttgctccttgtcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 2:741777‑M2/87‑1 (MQ=255) agtcccttctcatgtagccgttgtttcattgagttttgctccttcgcccaaaccatTGTTTATGAAAATTAAGTAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGAAcgc < 2:109980‑M2/87‑1 (MQ=255) gcggcctaatgtagccgttgctgccttgagttttgctccttctccccaaccatCGTTTATGAAAACGAAGAAATACCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa < 1:531480‑M2/90‑1 (MQ=255) tcctagtgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATca > 1:450424‑M2/51‑143 (MQ=255) agccgttgctgcattgagttttgctcgttctcccagttgagCTTTCATGAGAATGAAGAAAGGACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:905387‑M2/102‑1 (MQ=255) agccgttgctgcattgagttttgctccgtctcccaaaccaaACTCTCTTGATATTAAGAACTAAAAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 1:635474‑M2/102‑1 (MQ=255) acgatgtcacaaggagtttttctccttctcccaatccatCGTTTATGAAAATGAAGAAATTACAATCTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 2:548958‑M2/104‑1 (MQ=255) cacCAACAGGTAAGGCAGAGCCTTCTCCCAAACCAACGTTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 1:72816/143‑1 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg > 1:184539‑M2/36‑112 (MQ=255) tgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 2:184539‑M2/77‑1 (MQ=255) cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGCacac > 1:910734/1‑143 (MQ=255) atttagttttgcgccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:10561‑M2/114‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAACATGAAGAAATAACCCGCACATGGCCTCCTTCCTGCTTTTACCAGGGGGCTTTAACATGCTTATTGGCTATGTACGCGTATCAACACATAACCAGCACAGAAATc > 1:139907‑M2/29‑143 (MQ=255) gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCt > 1:393219/1‑143 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt > 1:79733‑M2/18‑143 (MQ=255) tcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATAAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTg > 2:728244‑M2/12‑143 (MQ=255) tcCCAAACCAACGTTAATGAACATGAAGAAATAACAAGCAAATAGCATCATTCCTACTTTTACCAGGGGGATTTAACATGCTTACTGGCTATGTACGCGTATAAAGAAATGACAAGAACACCGACCTCCAACATAATGCGCta > 2:147508/1‑142 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:741280‑M2/134‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTACTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCACAACACACATATACAACGCCATGCActgcc > 2:746606‑M2/10‑141 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGTTGAAAGGGGGAGTTAATATGTGCATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGGACtgtg > 2:111539‑M2/5‑143 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTGATTGGCTATGTACGCGCATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 1:930426‑M2/141‑1 (MQ=255) | GATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209481‑1209759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |