BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	263,514	Δ61,897 bp		[ykfI]–ykgH	71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	263514	325410	61897	92 [1]	[0] 92	[ykfI]–ykgH	[ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 263513	1 (0.010)	78 (1.150)	43/64	0.0	99.4%	coding (157/342 nt)	ykfI	CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
*	?	NC_000913	325411 =	0 (0.000)	78 (1.150)	43/64	0.0	99.4%	intergenic (‑47/+166)	ykgH/betA	uncharacterized protein YkgH/choline dehydrogenase

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/263478‑263513

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  NC_000913/325411‑325444

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                     >  1:4714228/1‑35

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                     >  1:1542950/1‑35

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                     <  1:3616077/35‑1

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGA                                     <  1:578361/35‑1

 TTCACGGCATCGGCTAGGGGGATACCGGCATCGAT                                    >  1:4653024/1‑35

 TTCACGGCATCGGCTAGGGGGATACCGGCATCGAT                                    >  1:6450303/1‑35

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  >  1:4803603/1‑35

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  <  1:5027565/35‑1

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  >  1:3654067/1‑35

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  >  1:1859749/1‑35

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  <  1:3407309/35‑1

   CACGGCATCGGCTAGGGTGATACCGGCATCGATAG                                  >  1:5952800/1‑35

    ACGGCATCGGCTAGGGTGATACCGGCATCGATAGT                                 <  1:4639055/35‑1

    ACGGCATCGGCTAGGGTGATACCGGCATCGATAGT                                 <  1:3954125/35‑1

    ACGGCATCGGCTAGGGTGATACCGGCATCGATAGT                                 <  1:879036/35‑1

     CGGCATCGGCTAGGGTGATACCGGCATCGATAGTC                                <  1:912787/35‑1

      GGCATCGGCTAGGGTGATACCGGCATCGATAGTCT                               <  1:2786675/35‑1

       GCATCGGCTAGGGTGATACCGGCATCGATAGTCTG                              >  1:3541747/1‑35

       GCATCGGCTAGGGTGATACCGGCATCGATAGTCTG                              <  1:4894361/35‑1

       GCATCGGCTAGGGTGATACCGGCATCGATAGTCTG                              >  1:6885691/1‑35

       GCATCGGCTAGGGGGATACCGGCATCGATAGTCTG                              >  1:3169702/1‑35

         ATCGGCTGGGGTGATACCGGCATCGATAGTCTGTA                            <  1:1951519/35‑1

         ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA                            <  1:5114464/35‑1

         ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA                            <  1:5480999/35‑1

          TCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT                           <  1:4060784/35‑1

          TCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT                           <  1:5271876/35‑1

          TCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT                           <  1:7154753/35‑1

           CGGCTAGGGTGATACCGGCATCGATAGTCTGTATC                          <  1:2451195/35‑1

           CGGCTAGGGTGATACCGGCATCGATAGTCTGTATC                          <  1:5562296/35‑1

            GGCTAGGGTGATACCGGCATCGATAGTCTGTATCA                         >  1:4640678/1‑35

            GGCTAGGGTGATACCGGCATCGATAGTCTGTATCA                         <  1:1349884/35‑1

            GGCTAGGGTGATACCGGCATCGATAGTCTGTATCA                         >  1:2525206/1‑35

             GCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                        <  1:3870041/35‑1

             GCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                        >  1:5989441/1‑35

             GCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                        >  1:7831751/1‑35

             GCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                        >  1:70052/1‑35

             GCTAGGGTGATACCGGCATCGATAGTCTGTATCAG                        <  1:2297729/35‑1

              CTAGGGTGATACCGGCATCGATAGTCTGTATCAGG                       >  1:7473844/1‑35

              CTAGGGTGATACCGGCATCGATAGTCTGTATCAGG                       >  1:3885065/1‑35

                AGGGTGATACCGGCATCGATAGTCTGTATCAGGAA                     >  1:4068813/1‑35

                AGGGTGATACCGGCATCGATAGTCTGTATCAGGAA                     >  1:7792365/1‑35

                AGGGTGATACCGGCATCGATAGTCTGTATCAGGAA                     >  1:2754433/1‑35

                 GGGTGATACCGGCATCGATAGTCTGTATCAGGAAT                    <  1:4720346/35‑1

                 GGGTGATACCGGCATCGATAGTCTGTATCAGGAAT                    <  1:2578337/35‑1

                  GGTGATACCGGCATCGATAGTCTGTATCAGGAATG                   >  1:7721155/1‑35

                  GGTGATACCGGCATCGATAGTCTGTATCAGGAATG                   >  1:3765078/1‑35

                  GGTGATACCGGCATCGATAGTCTGTATCAGGAATG                   <  1:7606162/35‑1

                   GTGATACCGGCATCGATAGTCTGTATCAGGAATGT                  <  1:1136343/35‑1

                   GTGATACCGGCATCGATAGTCTGTATCAGGAATGT                  <  1:4493425/35‑1

                   GTGATACCGGCATCGATAGTCTGTATCAGGAATGT                  >  1:3996999/1‑35

                   GTGATACCGGCATCGATAGTCTGTATCAGGAATGT                  >  1:2165981/1‑35

                    TGATACCGGCATCGATAGTCTGTATCAGGAATGTT                 >  1:1365452/1‑35

                    TGATACCGGCATCGATAGTCTGTATCAGGAATGTT                 <  1:4841417/35‑1

                    TGATACCGGCATCGATAGTCTGTATCAGGAATGTT                 <  1:752544/35‑1

                    TGATACCGGCATCGATAGTCTGTATCAGGAATGTT                 >  1:523645/1‑35

                     GATACCGGCATCGATAGTCTGTATCAGGAATGTTC                >  1:5503165/1‑35

                     GATACCGGCATCGATAGTCTGTATCAGGAATGTTC                <  1:2088103/35‑1

                     GATACCGGCATCGATAGTCTGTATCAGGAATGTTC                <  1:5319034/35‑1

                      ATACCGGCATCGATAGTCTGTATCAGGAATGTTCG               >  1:7150463/1‑35

                      ATACCGGCATCGATAGTCTGTATCAGGAATGTTCG               <  1:855606/35‑1

                       TACCGGCATCGATAGTCTGTATCAGGAATGTTCGG              >  1:7799146/1‑35

                        ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG             >  1:611596/1‑35

                         CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT            <  1:5980834/35‑1

                         CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT            <  1:7215118/35‑1

                         CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT            <  1:3750891/35‑1

                         CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT            <  1:1320828/35‑1

                          CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT           <  1:164234/35‑1

                           GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA          <  1:321684/35‑1

                           GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTA          <  1:6709005/35‑1

                            GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA         >  1:5581008/1‑35

                            GCATCGATAGTCTGTATCAGGAATGTTCGGGTTAA         <  1:4215816/35‑1

                             CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA        >  1:275041/1‑35

                             CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA        <  1:4431943/35‑1

                              ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT       <  1:6431431/35‑1

                              ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT       >  1:842013/1‑35

                               TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA      <  1:5796680/35‑1

                               TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA      <  1:5351830/35‑1

                               TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA      <  1:5351871/35‑1

                               TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA      >  1:1905435/1‑35

                                CGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT     <  1:3349157/35‑1

                                CGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT     <  1:4064900/35‑1

                                CGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT     <  1:5670373/35‑1

                                 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATC    <  1:4348641/35‑1

                                 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATC    >  1:5962930/1‑35

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:5644352/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:7046392/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:2715171/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  1:1842079/1‑35

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  1:5097670/1‑35

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:1700016/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  1:4954708/1‑35

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:6760890/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  <  1:59098/35‑1

                                   TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  1:4672903/1‑35

                                   TAGTCTGTAACAGGAATGTTCGGGTTAAATATCAG  >  1:2802047/1‑35

ATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/263478‑263513

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG  >  NC_000913/325411‑325444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.