Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 263,514 Δ61,897 bp [ykfI]–ykgH 71 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 263514 325410 61897 92 [1] [0] 92 [ykfI]–ykgH [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2635131 (0.010)78 (1.150) 43/64 0.0 99.4% coding (157/342 nt) ykfI CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
?NC_000913 325411 = 0 (0.000)intergenic (‑47/+166) ykgH/betA uncharacterized protein YkgH/choline dehydrogenase

AATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC  >  NC_000913/325378‑325445
                                 |                                  
cacggcatcggctagggtgataccggcatcgatAg                                   >  1:5952800‑M2/34‑35 (MQ=255)
cacggcatcggctagggtgataccggcatcgatAg                                   <  1:5027565‑M2/2‑1 (MQ=255)
cacggcatcggctagggtgataccggcatcgatAg                                   >  1:4803603‑M2/34‑35 (MQ=255)
cacggcatcggctagggtgataccggcatcgatAg                                   >  1:1859749‑M2/34‑35 (MQ=255)
cacggcatcggctagggtgataccggcatcgatAg                                   >  1:3654067‑M2/34‑35 (MQ=255)
cacggcatcggctagggtgataccggcatcgatAg                                   <  1:3407309‑M2/2‑1 (MQ=255)
 acggcatcggctagggtgataccggcatcgatAGt                                  <  1:879036‑M2/3‑1 (MQ=255)
 acggcatcggctagggtgataccggcatcgatAGt                                  <  1:4639055‑M2/3‑1 (MQ=255)
 acggcatcggctagggtgataccggcatcgatAGt                                  <  1:3954125‑M2/3‑1 (MQ=255)
  cggcatcggctagggtgataccggcatcgatAGTc                                 <  1:912787‑M2/4‑1 (MQ=255)
   ggcatcggctagggtgataccggcatcgatAGTCt                                <  1:2786675‑M2/5‑1 (MQ=255)
    gcatcggctagggtgataccggcatcgatAGTCTg                               <  1:4894361‑M2/6‑1 (MQ=255)
    gcatcggctagggtgataccggcatcgatAGTCTg                               >  1:6885691‑M2/30‑35 (MQ=255)
    gcatcggctagggtgataccggcatcgatAGTCTg                               >  1:3541747‑M2/30‑35 (MQ=255)
    gcatcggctagggggataccggcatcgatAGTCTg                               >  1:3169702‑M2/30‑35 (MQ=255)
      atcggctggggtgataccggcatcgatAGTCTGTa                             <  1:1951519‑M2/8‑1 (MQ=255)
      atcggctagggtgataccggcatcgatAGTCTGTa                             <  1:5114464‑M2/8‑1 (MQ=255)
      atcggctagggtgataccggcatcgatAGTCTGTa                             <  1:5480999‑M2/8‑1 (MQ=255)
       tcggctagggtgataccggcatcgatAGTCTGTAt                            <  1:5271876‑M2/9‑1 (MQ=255)
       tcggctagggtgataccggcatcgatAGTCTGTAt                            <  1:4060784‑M2/9‑1 (MQ=255)
       tcggctagggtgataccggcatcgatAGTCTGTAt                            <  1:7154753‑M2/9‑1 (MQ=255)
        cggctagggtgataccggcatcgatAGTCTGTATc                           <  1:2451195‑M2/10‑1 (MQ=255)
        cggctagggtgataccggcatcgatAGTCTGTATc                           <  1:5562296‑M2/10‑1 (MQ=255)
         ggctagggtgataccggcatcgatAGTCTGTATCa                          >  1:4640678‑M2/25‑35 (MQ=255)
         ggctagggtgataccggcatcgatAGTCTGTATCa                          <  1:1349884‑M2/11‑1 (MQ=255)
         ggctagggtgataccggcatcgatAGTCTGTATCa                          >  1:2525206‑M2/25‑35 (MQ=255)
          gctagggtgataccggcatcgatAGTCTGTATCAg                         <  1:2297729‑M2/12‑1 (MQ=255)
          gctagggtgataccggcatcgatAGTCTGTATCAg                         >  1:7831751‑M2/24‑35 (MQ=255)
          gctagggtgataccggcatcgatAGTCTGTATCAg                         >  1:5989441‑M2/24‑35 (MQ=255)
          gctagggtgataccggcatcgatAGTCTGTATCAg                         <  1:3870041‑M2/12‑1 (MQ=255)
          gctagggtgataccggcatcgatAGTCTGTATCAg                         >  1:70052‑M2/24‑35 (MQ=255)
           ctagggtgataccggcatcgatAGTCTGTATCAgg                        >  1:7473844‑M2/23‑35 (MQ=255)
           ctagggtgataccggcatcgatAGTCTGTATCAgg                        >  1:3885065‑M2/23‑35 (MQ=255)
             agggtgataccggcatcgatAGTCTGTATCAGGaa                      >  1:7792365‑M2/21‑35 (MQ=255)
             agggtgataccggcatcgatAGTCTGTATCAGGaa                      >  1:4068813‑M2/21‑35 (MQ=255)
             agggtgataccggcatcgatAGTCTGTATCAGGaa                      >  1:2754433‑M2/21‑35 (MQ=255)
              gggtgataccggcatcgatAGTCTGTATCAGGAAt                     <  1:2578337‑M2/16‑1 (MQ=255)
              gggtgataccggcatcgatAGTCTGTATCAGGAAt                     <  1:4720346‑M2/16‑1 (MQ=255)
               ggtgataccggcatcgatAGTCTGTATCAGGAATg                    >  1:7721155‑M2/19‑35 (MQ=255)
               ggtgataccggcatcgatAGTCTGTATCAGGAATg                    >  1:3765078‑M2/19‑35 (MQ=255)
               ggtgataccggcatcgatAGTCTGTATCAGGAATg                    <  1:7606162‑M2/17‑1 (MQ=255)
                gtgataccggcatcgatAGTCTGTATCAGGAATGt                   <  1:1136343‑M2/18‑1 (MQ=255)
                gtgataccggcatcgatAGTCTGTATCAGGAATGt                   >  1:2165981‑M2/18‑35 (MQ=255)
                gtgataccggcatcgatAGTCTGTATCAGGAATGt                   <  1:4493425‑M2/18‑1 (MQ=255)
                gtgataccggcatcgatAGTCTGTATCAGGAATGt                   >  1:3996999‑M2/18‑35 (MQ=255)
                 tgataccggcatcgatAGTCTGTATCAGGAATGtt                  <  1:752544‑M2/19‑1 (MQ=255)
                 tgataccggcatcgatAGTCTGTATCAGGAATGtt                  <  1:4841417‑M2/19‑1 (MQ=255)
                 tgataccggcatcgatAGTCTGTATCAGGAATGtt                  >  1:523645‑M2/17‑35 (MQ=255)
                 tgataccggcatcgatAGTCTGTATCAGGAATGtt                  >  1:1365452‑M2/17‑35 (MQ=255)
                  gataccggcatcgatAGTCTGTATCAGGAATGTTc                 <  1:2088103‑M2/20‑1 (MQ=255)
                  gataccggcatcgatAGTCTGTATCAGGAATGTTc                 >  1:5503165‑M2/16‑35 (MQ=255)
                  gataccggcatcgatAGTCTGTATCAGGAATGTTc                 <  1:5319034‑M2/20‑1 (MQ=255)
                   ataccggcatcgatAGTCTGTATCAGGAATGTTCg                <  1:855606‑M2/21‑1 (MQ=255)
                   ataccggcatcgatAGTCTGTATCAGGAATGTTCg                >  1:7150463‑M2/15‑35 (MQ=255)
                    taccggcatcgatAGTCTGTATCAGGAATGTTCgg               >  1:7799146‑M2/14‑35 (MQ=255)
                     accggcatcgatAGTCTGTATCAGGAATGTTCggg              >  1:611596‑M2/13‑35 (MQ=255)
                      ccggcatcgatAGTCTGTATCAGGAATGTTCGGGt             <  1:3750891‑M2/24‑1 (MQ=255)
                      ccggcatcgatAGTCTGTATCAGGAATGTTCGGGt             <  1:5980834‑M2/24‑1 (MQ=255)
                      ccggcatcgatAGTCTGTATCAGGAATGTTCGGGt             <  1:7215118‑M2/24‑1 (MQ=255)
                      ccggcatcgatAGTCTGTATCAGGAATGTTCGGGt             <  1:1320828‑M2/24‑1 (MQ=255)
                       cggcatcgatAGTCTGTATCAGGAATGTTCGGGtt            <  1:164234‑M2/25‑1 (MQ=255)
                        ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTa           <  1:6709005‑M2/26‑1 (MQ=255)
                        ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTa           <  1:321684‑M2/26‑1 (MQ=255)
                         gcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa          >  1:5581008‑M2/9‑35 (MQ=255)
                         gcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa          <  1:4215816‑M2/27‑1 (MQ=255)
                          catcgatAGTCTGTATCAGGAATGTTCGGGTTaaa         >  1:275041‑M2/8‑35 (MQ=255)
                          catcgatAGTCTGTATCAGGAATGTTCGGGTTaaa         <  1:4431943‑M2/28‑1 (MQ=255)
                           atcgatAGTCTGTATCAGGAATGTTCGGGTTAAat        >  1:842013‑M2/7‑35 (MQ=255)
                           atcgatAGTCTGTATCAGGAATGTTCGGGTTAAat        <  1:6431431‑M2/29‑1 (MQ=255)
                            tcgatAGTCTGTATCAGGAATGTTCGGGTTAAata       >  1:1905435‑M2/6‑35 (MQ=255)
                            tcgatAGTCTGTATCAGGAATGTTCGGGTTAAata       <  1:5796680‑M2/30‑1 (MQ=255)
                            tcgatAGTCTGTATCAGGAATGTTCGGGTTAAata       <  1:5351871‑M2/30‑1 (MQ=255)
                            tcgatAGTCTGTATCAGGAATGTTCGGGTTAAata       <  1:5351830‑M2/30‑1 (MQ=255)
                             cgatAGTCTGTATCAGGAATGTTCGGGTTAAatat      <  1:3349157‑M2/31‑1 (MQ=255)
                             cgatAGTCTGTATCAGGAATGTTCGGGTTAAatat      <  1:5670373‑M2/31‑1 (MQ=255)
                             cgatAGTCTGTATCAGGAATGTTCGGGTTAAatat      <  1:4064900‑M2/31‑1 (MQ=255)
                              gatAGTCTGTATCAGGAATGTTCGGGTTAAATATc     <  1:4348641‑M2/32‑1 (MQ=255)
                              gatAGTCTGTATCAGGAATGTTCGGGTTAAATATc     >  1:5962930‑M2/4‑35 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   >  1:1842079‑M2/2‑35 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:2715171‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:7046392‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:6760890‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:1700016‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:59098‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   <  1:5644352‑M2/34‑1 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   >  1:5097670‑M2/2‑35 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   >  1:4954708‑M2/2‑35 (MQ=255)
                                tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg   >  1:4672903‑M2/2‑35 (MQ=255)
                                tAGTCTGTAACAGGAATGTTCGGGTTAAATATCAg   >  1:2802047‑M2/2‑35 (MQ=255)
                                 aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc  <  1:2693830/35‑1 (MQ=255)
                                 aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc  <  1:4804889/35‑1 (MQ=255)
                                 aGTCTGTATCAGGAATGCTCGGGTTAAATATCAGc  >  1:2343768/1‑35 (MQ=255)
                                 |                                  
AATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC  >  NC_000913/325378‑325445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.