BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	332,366	Δ44,951 bp		pdeL–yaiL	39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	332366	377316	44951	116 [0]	[0] 121	pdeL–yaiL	pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 332365	0 (0.000)	113 (1.560)	44/68	0.0	100%	intergenic (+489/‑6)	yahV/pdeL	protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL
*	?	NC_000913	377317 =	NA (NA)	113 (1.560)	44/68	0.0	100%	intergenic (+6/+218)	yaiL/frmB	DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB

Only 100 of 113 total aligned reads displayed.

CACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332332‑332365

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTA  >  NC_000913/377317‑377350

CACTCATACTGAACAGCGATAAAAGATAAAGGTGG                                   <  1:3945624/35‑1

 cCTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  <  1:2873681/34‑1

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  >  1:6610973/1‑35

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  <  1:2203608/35‑1

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  >  1:5003734/1‑35

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  <  1:7532710/35‑1

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  <  1:1563372/35‑1

 ACTCATACTGAACAGCGATAAAAGATAAAGGTGGA                                  <  1:7763501/35‑1

  CTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                 <  1:7569478/35‑1

  CTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                 <  1:1419247/35‑1

  CTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                 <  1:7294089/35‑1

  CTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                 <  1:1412086/35‑1

  CTCATACTGAACAGCGATAAAAGATAAAGGTGGAT                                 <  1:984763/35‑1

   TCATACTGAACAGCGATAAAAGATAAAGGTGGATA                                <  1:7353351/35‑1

   TCATACTGAACAGCGATAAAAGATAAAGGTGGATA                                <  1:1880332/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:4684571/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:4684572/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:1039892/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              >  1:4200067/1‑35

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              >  1:4116509/1‑35

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              >  1:7655735/1‑35

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:3274948/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:2185635/35‑1

     ATACTGAACAGCGATAAAAGATAAAGGTGGATAAG                              <  1:204160/35‑1

      TACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                             <  1:3231894/35‑1

      TACTGAACAGCGATAAAAGATAAAGGTGGATAAGT                             <  1:1718357/35‑1

       ACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC                            >  1:2599240/1‑35

       ACTGAACAGCGATAAAAGATAAAGGTGGATAAGTC                            >  1:6376976/1‑35

        CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                           >  1:429446/1‑35

        CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                           >  1:2876733/1‑35

        CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                           >  1:5558941/1‑35

        CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                           >  1:3846547/1‑35

        CTGAACAGCGATAAAAGATAAAGGTGGATAAGTCG                           >  1:7380829/1‑35

          GAACAGCGATAAAAGATAAAGGTGGATAAGTCGTG                         >  1:4864385/1‑35

           AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                        >  1:1740551/1‑35

           AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                        >  1:5720456/1‑35

           AACAGCGATAAAAGATAAAGGTGGATAAGTCGTGC                        >  1:7493477/1‑35

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       <  1:2417780/35‑1

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       <  1:5570242/35‑1

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       <  1:1926459/35‑1

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       >  1:5668262/1‑35

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       <  1:1926423/35‑1

            ACAGCGATAAAAGATAAAGGTGGATAAGTCGTGCG                       >  1:3997628/1‑35

              AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCA                     <  1:6448018/35‑1

              AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCA                     <  1:293093/35‑1

              AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCA                     <  1:7415316/35‑1

              AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCA                     <  1:5145357/35‑1

              AGCGATAAAAGATAAAGGTGGATAAGTCGTGCGCA                     <  1:7845453/35‑1

               GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAG                    <  1:4077702/35‑1

               GCGATAAAAGATAAAGGTGGATAAGTCGTGCGCAG                    >  1:7445352/1‑35

                CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGA                   <  1:6455296/35‑1

                CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGA                   <  1:6460926/35‑1

                CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGA                   <  1:5322347/35‑1

                CGATAAAAGATAAAGGTGGATAAGTCGTGCGCAGA                   >  1:4768120/1‑35

                 GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT                  >  1:3329371/1‑35

                 GATAAAAGATAAAGGTGGATAAGTCGTGCGCAGAT                  >  1:6815934/1‑35

                  ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                 >  1:4742891/1‑35

                  ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                 >  1:5765142/1‑35

                  ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                 >  1:5632797/1‑35

                  ATAAAAGATAAAGGTGGATAAGTCGTGCGCAGATG                 >  1:7858771/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:6397595/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:7868291/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                <  1:7001167/35‑1

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:4582758/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                <  1:7246901/35‑1

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:1228693/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                <  1:7366851/35‑1

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:1887106/1‑35

                   TAAAAGATAAAGGTGGATAAGTCGTGCGCAGATGC                >  1:4963907/1‑35

                    AAAAGATAAAGGTGGATAAGTCGTGCGCAGATGCC               <  1:6816117/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              <  1:3887425/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              <  1:2077260/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              <  1:4157457/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              <  1:466761/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              <  1:6226249/35‑1

                     AAAGATAAAGGTGGATAAGTCGTGCGCAGATGCCT              >  1:6103194/1‑35

                      AAGATAAAGGTGGATAAGTCGTGCGCAGATGCCTG             >  1:1468131/1‑35

                       AGATAAAGGTGGATAAGTCGTGCGCAGATGCCTGA            >  1:7875403/1‑35

                        GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT           >  1:4487175/1‑35

                        GATAAAGGTGGATAAGTCGTGCGCAGATGCCTGAT           <  1:2695785/35‑1

                         ATAAAGGTGGATAAGTCGTGCGCAGATGCCTGATG          >  1:6587216/1‑35

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         >  1:4229599/1‑35

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         >  1:3540265/1‑35

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         >  1:4909001/1‑35

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         <  1:2898236/35‑1

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         <  1:2190824/35‑1

                          TAAAGGTGGATAAGTCGTGCGCAGATGCCTGATGC         <  1:3996500/35‑1

                            AAGGTGGATAAGTCGTGCGCAGATGCCTGATGCGA       >  1:262720/1‑35

                             AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC      >  1:1400266/1‑35

                             AGGTGGATAAGTCGTGCGCAGATGCCTGATGCGAC      <  1:1625592/35‑1

                              GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG     >  1:5229324/1‑35

                              GGTGGATAAGTCGTGCGCAGATGCCTGATGCGACG     >  1:7056197/1‑35

                               GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC    >  1:4852431/1‑35

                               GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC    <  1:3376757/35‑1

                               GTGGATAAGTCGTGCGCAGATGCCTGATGCGACGC    <  1:7173913/35‑1

                                TGGATAAGTCGTGCGCAGATGCCTGATGCGCCGCT   >  1:1940303/1‑35

                                TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT   >  1:1690620/1‑35

                                TGGATAAGTCGTGCGCAGATGCCTGATGCGACGCT   >  1:2332986/1‑35

                                 GGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA  <  1:778741/35‑1

                                 GGATAAGTCGTGCGCAGATGCCTGATGCGACGCTA  >  1:1044751/1‑35

CACTCATACTGAACAGCGATAAAAGATAAAGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/332332‑332365

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATAAGTCGTGCGCAGATGCCTGATGCGACGCTA  >  NC_000913/377317‑377350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.