| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 116 [0] | [0] 121 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 113 (1.560) | 44/68 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 121 total aligned reads displayed.
TCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT > NC_000913/377283‑377351 | cactcatactgaacagcgataaaagataaaggtgg < 1:3945624‑M2/1‑1 (MQ=255) cctcatactgaacagcgataaaagataaaggtgGa < 1:2873681‑M2/2‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGa > 1:6610973‑M2/34‑35 (MQ=255) actcatactgaacagcgataaaagataaaggtgGa < 1:2203608‑M2/2‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGa < 1:1563372‑M2/2‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGa < 1:7532710‑M2/2‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGa < 1:7763501‑M2/2‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGAt < 1:1412086‑M2/3‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGAt < 1:73662‑M2/3‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGAt < 1:7294089‑M2/3‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGAt > 1:4452635‑M2/33‑35 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGAt < 1:984763‑M2/3‑1 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATa < 1:7353351‑M2/4‑1 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATa < 1:1880332‑M2/4‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:4684572‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:6348713‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:1039892‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:4684571‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg > 1:4116509‑M2/30‑35 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg > 1:7655735‑M2/30‑35 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:3274948‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:2185635‑M2/6‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAg < 1:204160‑M2/6‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGt < 1:3231894‑M2/7‑1 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTc > 1:6376976‑M2/28‑35 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCg > 1:429446‑M2/27‑35 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCg > 1:2876733‑M2/27‑35 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCg > 1:7380829‑M2/27‑35 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCg > 1:3846547‑M2/27‑35 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTg > 1:4864385‑M2/25‑35 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTgc > 1:7493477‑M2/24‑35 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTgc > 1:1740551‑M2/24‑35 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTgc > 1:5720456‑M2/24‑35 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTgcg < 1:1926459‑M2/13‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTgcg < 1:1926423‑M2/13‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTgcg < 1:5570242‑M2/13‑1 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTgcg > 1:5668262‑M2/23‑35 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTgcg < 1:2417780‑M2/13‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCa < 1:5145357‑M2/15‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCa < 1:7415316‑M2/15‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCa < 1:7845453‑M2/15‑1 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:4077702‑M2/16‑1 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAg > 1:7445352‑M2/20‑35 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:6455296‑M2/17‑1 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:6460926‑M2/17‑1 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGa > 1:4768120‑M2/19‑35 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:5322347‑M2/17‑1 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:3329371‑M2/18‑35 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:6815934‑M2/18‑35 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:5632797‑M2/17‑35 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:5765142‑M2/17‑35 (MQ=255) ataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:4742891‑M2/17‑35 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:7001167‑M2/20‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:7246901‑M2/20‑1 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:1228693‑M2/16‑35 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:6397595‑M2/16‑35 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:4963907‑M2/16‑35 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:1887106‑M2/16‑35 (MQ=255) taaaagataaaggtgGATAAGTCGTGCGCAGATGc > 1:7868291‑M2/16‑35 (MQ=255) aaaagataaaggtgGATAAGTCGTGCGCAGATGcc < 1:6816117‑M2/21‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:3887425‑M2/22‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:6226249‑M2/22‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:2077260‑M2/22‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:466761‑M2/22‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:4157457‑M2/22‑1 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTg > 1:1468131‑M2/13‑35 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGa < 1:3225400‑M2/24‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:7875403‑M2/12‑35 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:2695785‑M2/25‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:4487175‑M2/11‑35 (MQ=255) ataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:6587216‑M2/10‑35 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:4909001‑M2/9‑35 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:4229599‑M2/9‑35 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:2898236‑M2/27‑1 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:3996500‑M2/27‑1 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:262720‑M2/7‑35 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:1567187‑M2/7‑35 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:1400266‑M2/6‑35 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:1625592‑M2/30‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 1:5229324‑M2/5‑35 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 1:3985552‑M2/5‑35 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:3376757‑M2/32‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:7761458‑M2/32‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:4852431‑M2/4‑35 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:5419874‑M2/4‑35 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc < 1:7173913‑M2/32‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGCCGCt > 1:1940303‑M2/3‑35 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt > 1:1690620‑M2/3‑35 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt > 1:2332986‑M2/3‑35 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt > 1:2484244‑M2/3‑35 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa < 1:778741‑M2/34‑1 (MQ=255) gGATAAGTCGTGCGCAGATGCCTGATGCGACGCTa > 1:1044751‑M2/2‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:4818845/1‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:6674717/1‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:2150906/35‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:6553242/1‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt < 1:400634/35‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:4569002/1‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:6169493/1‑35 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTAt > 1:898942/1‑35 (MQ=255) | TCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTAT > NC_000913/377283‑377351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |