| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 44 (0.740) +CGAGAT |
24/56 | 0.2 | 62.2% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 4070444 = | 65 (0.900) | intergenic (‑43/+71) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase | |||||
CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380078‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGG > NC_000913/4070444‑4070473 |||||| CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAC < 1:3196766/35‑1 CAGGTCAGACGGGCTGCAAGTTGCAGACCGTTACG > 1:7650213/1‑35 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAG > 1:6737398/1‑35 GGTCAGACGGGCTGCAAGTTGCAGACCGTTACGAG > 1:2161054/1‑35 GTCAGACGGGCTGCAAGTTGCAGACCGTTACGAGA < 1:569527/35‑1 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAT > 1:1055468/1‑35 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAT < 1:5389713/35‑1 TCAGACGGGCTGCAAGTTGCAGACCGTTACGAGAT > 1:4783028/1‑35 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:4714806/35‑1 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:2453294/35‑1 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:2720363/35‑1 CAGACGGGCTGCAAGTTGCAGACCGTTACGAGATG < 1:2865017/35‑1 AGACGGGCTGCAAGTTGCAGACCGTTACGAGATGG > 1:2954548/1‑35 GACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA > 1:923974/1‑35 GACGGGCTGCAAGTTGCAGACCGTTACGAGATGGA > 1:5351734/1‑35 GGGCTGCAAGTTGCAGACCGTTACGAGATGGACGG > 1:5222046/1‑35 GGCTGCAAGTTGCAGACCGTTACGAGATGGACGGT > 1:1298498/1‑35 GCTGCAAGTTGCAGACCGTTACGAGATGGACGGTC < 1:7486792/35‑1 GCTGCAAGTTGCAGACCGTTACGAGATGGACGGTC > 1:7872723/1‑35 CTGCAAGTTGCAGACCGTTACGAGATGGACGGTCC < 1:7009050/35‑1 CTGCAAGTTGCAGACCGTTACGAGATGGACGGTCC < 1:7873034/35‑1 TGCAAGTTGCAGACCGTTACGAGATGGACGGTCCC < 1:527147/35‑1 GCAAGTTGCAGACCGTTACGAGATGGACGGTCCCC < 1:2155182/35‑1 CAAGTTGCAGGCCGTTACGAGATGGACGGTCCCCT < 1:4798090/35‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:7436061/35‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:3839880/35‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:6247499/35‑1 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT > 1:85500/1‑35 CAAGTTGCAGACCGTTACGAGATGGACGGTCCCCT < 1:881604/35‑1 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:4895117/1‑35 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG < 1:4666152/35‑1 AGTTGCAGACCGTTACGAGATGGACGGTCCCCTCG > 1:333750/1‑35 GTTGCAGACCGTTACGAGATGGACGGTCCCCTCGC < 1:703009/35‑1 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCC > 1:2365066/1‑35 TTGCAGACCGTTACGAGATGGACGGTCCCCTCGCC > 1:6132478/1‑35 TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC < 1:7368322/35‑1 TGCAGACCGTTACGAGATGGACGGTCCCCTCGCCC < 1:1233833/35‑1 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC > 1:4874449/1‑35 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC > 1:1964115/1‑35 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC < 1:7427304/35‑1 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC < 1:7199230/35‑1 GCAGACCGTTACGAGATGGACGGTCCCCTCGCCCC < 1:5173649/35‑1 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCc > 1:4653869/1‑34 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCc < 1:2622022/35‑2 CAGACCGTTACGAGATGGACGGTCCCCTCGCCCCc > 1:4844950/1‑34 CGTTACGAGATGGACGGTCCCCTCGCCCCCTTGGG < 1:685423/35‑1 TTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA > 1:4508747/1‑35 TTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA > 1:4568130/1‑35 TTACGAGATGGACGGTCCCCTCGCCCCCTTGGGGA < 1:5879104/35‑1 TACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAG > 1:1218167/1‑35 ACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGA > 1:1725477/1‑35 ACGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGA > 1:7063751/1‑35 CGAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAG > 1:174527/1‑35 GAGATGGACGGTCCCCTCGCCCCCTTGGGGAGAGG > 1:5993141/1‑35 |||||| CCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/380078‑380111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGACGGTCCCCTCGCCCCTTTGGGGAGAGG > NC_000913/4070444‑4070473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |