New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3801110 (0.000)44 (0.740)
+CGAGAT		 24/56 0.2 62.2% coding (732/774 nt) yaiO outer membrane protein YaiO
?NC_000913 4070444 = 65 (0.900)intergenic (‑43/+71) yihR/yihS putative aldose 1‑epimerase YihR/sulfoquinovose isomerase

Only 100 of 111 total aligned reads displayed.

CCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTA  >  NC_000913/4070410‑4070477
                                  |                                 
ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCg                                   >  1:6367352/1‑35 (MQ=255)
ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCg                                   <  1:6385934/35‑1 (MQ=255)
ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCg                                   <  1:299352/35‑1 (MQ=255)
ccGTGAGGCTGATGTCAAACCCAAAAACTGCACCg                                   <  1:6966229/35‑1 (MQ=255)
cagacgggctgcaagttgcagaccgttacgagatg                                   <  1:4714806‑M2/1‑1 (MQ=255)
cagacgggctgcaagttgcagaccgttacgagatg                                   <  1:2865017‑M2/1‑1 (MQ=255)
cagacgggctgcaagttgcagaccgttacgagatg                                   <  1:2720363‑M2/1‑1 (MQ=255)
cagacgggctgcaagttgcagaccgttacgagatg                                   <  1:2453294‑M2/1‑1 (MQ=255)
 agacgggctgcaagttgcagaccgttacgagatgg                                  >  1:2954548‑M2/34‑35 (MQ=255)
  gacgggctgcaagttgcagaccgttacgagatGGa                                 >  1:5351734‑M2/33‑35 (MQ=255)
  gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa                                 >  1:6185789/1‑35 (MQ=255)
  gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa                                 >  1:3638873/1‑35 (MQ=255)
  gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa                                 <  1:6899904/35‑1 (MQ=255)
  gTGAGGCTGATGTCAAACCCAAAAACTGCACCGGa                                 <  1:6992495/35‑1 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:3884133/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:4184780/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:816873/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:4587815/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:742581/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:5025394/1‑35 (MQ=255)
   tGAGGCTGATGTCAAACCCAAAAACTGCACCGGAc                                >  1:1564970/1‑35 (MQ=255)
     aGGCTGATGTCAAACCCAAAAACTGCACCGGACgg                              >  1:5361523/1‑35 (MQ=255)
      ggctgcaagttgcagaccgttacgagatGGACGGt                             >  1:1298498‑M2/29‑35 (MQ=255)
       gctgcaagttgcagaccgttacgagatGGACGGTc                            >  1:7872723‑M2/28‑35 (MQ=255)
       gCTGATGTCAAACCCAAAAACTGCACCGGACGGTc                            <  1:1361498/35‑1 (MQ=255)
        ctgcaagttgcagaccgttacgagatGGACGGTcc                           <  1:7009050‑M2/9‑1 (MQ=255)
        ctgcaagttgcagaccgttacgagatGGACGGTcc                           <  1:7873034‑M2/9‑1 (MQ=255)
        cTGATGTCAAACCCAAAAACTGCACCGGACGGTcc                           <  1:5466207/35‑1 (MQ=255)
        cTGATGTCAAACCCAAAAACTGCACCGGACGGTcc                           <  1:7238933/35‑1 (MQ=255)
         tgcaagttgcagaccgttacgagatGGACGGTccc                          <  1:527147‑M2/10‑1 (MQ=255)
          gcaagttgcagaccgttacgagatGGACGGTcccc                         <  1:2155182‑M2/11‑1 (MQ=255)
          gATGTCAAACCCAAAAACTGCACCGGACGGTcccc                         <  1:5847775/35‑1 (MQ=255)
           caagttgcaggccgttacgagatGGACGGTCCCCt                        <  1:4798090‑M2/12‑1 (MQ=255)
           caagttgcagaccgttacgagatGGACGGTCCCCt                        <  1:881604‑M2/12‑1 (MQ=255)
           caagttgcagaccgttacgagatGGACGGTCCCCt                        <  1:3839880‑M2/12‑1 (MQ=255)
           caagttgcagaccgttacgagatGGACGGTCCCCt                        <  1:6247499‑M2/12‑1 (MQ=255)
           caagttgcagaccgttacgagatGGACGGTCCCCt                        <  1:7436061‑M2/12‑1 (MQ=255)
           caagttgcagaccgttacgagatGGACGGTCCCCt                        >  1:85500‑M2/24‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        >  1:4338656/1‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        >  1:4450255/1‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        >  1:2328733/1‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        >  1:7315916/1‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        >  1:7833818/1‑35 (MQ=255)
           aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCt                        <  1:4799401/35‑1 (MQ=255)
            tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc                       >  1:6446386/1‑35 (MQ=255)
            tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc                       <  1:6478310/35‑1 (MQ=255)
            tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTc                       >  1:5021435/1‑35 (MQ=255)
             gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCg                      >  1:6505727/1‑35 (MQ=255)
             agttgcagaccgttacgagatGGACGGTCCCCTCg                      >  1:4895117‑M2/22‑35 (MQ=255)
             agttgcagaccgttacgagatGGACGGTCCCCTCg                      <  1:4666152‑M2/14‑1 (MQ=255)
              tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGc                     >  1:6656936/1‑35 (MQ=255)
              tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGc                     >  1:4200568/1‑35 (MQ=255)
              tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGc                     >  1:1384605/1‑35 (MQ=255)
              gttgcagaccgttacgagatGGACGGTCCCCTCGc                     <  1:703009‑M2/15‑1 (MQ=255)
               ttgcagaccgttacgagatGGACGGTCCCCTCGcc                    >  1:6132478‑M2/20‑35 (MQ=255)
                tgcagaccgttacgagatGGACGGTCCCCTCGccc                   <  1:7368322‑M2/17‑1 (MQ=255)
                tgcagaccgttacgagatGGACGGTCCCCTCGccc                   <  1:1233833‑M2/17‑1 (MQ=255)
                aaaCCCAAAAACTGCCCCGGACGGTCCCCTCGccc                   <  1:3470325/35‑1 (MQ=255)
                aaaCCCAAAAACTGCACCGGACGGTCCCCTCGccc                   >  1:1748787/1‑35 (MQ=255)
                aaaCCCAAAAACTGCACCGGACGGTCCCCTCGccc                   >  1:7500904/1‑35 (MQ=255)
                aaaCCCAAAAACTGCACCGGACGGTCCCCTCGccc                   >  1:6710910/1‑35 (MQ=255)
                aaaCCCAAAAACTGCACCGGACGGTCCCCTCGccc                   <  1:7673908/35‑1 (MQ=255)
                 gcagaccgttacgagatGGACGGTCCCCTCGcccc                  <  1:7427304‑M2/18‑1 (MQ=255)
                 gcagaccgttacgagatGGACGGTCCCCTCGcccc                  <  1:7199230‑M2/18‑1 (MQ=255)
                 gcagaccgttacgagatGGACGGTCCCCTCGcccc                  >  1:1964115‑M2/18‑35 (MQ=255)
                 gcagaccgttacgagatGGACGGTCCCCTCGcccc                  >  1:4874449‑M2/18‑35 (MQ=255)
                 gcagaccgttacgagatGGACGGTCCCCTCGcccc                  <  1:5173649‑M2/18‑1 (MQ=255)
                 aaCCCAAAAACTGCACCGGACGGTCCCCTCGcccc                  <  1:7236367/35‑1 (MQ=255)
                  cagaccgttacgagatGGACGGTCCCCTCgccccc                 >  1:4844950‑M2/17‑34 (MQ=255)
                  cagaccgttacgagatGGACGGTCCCCTCgccccc                 <  1:2622022‑M2/19‑2 (MQ=255)
                  cagaccgttacgagatGGACGGTCCCCTCgccccc                 >  1:4653869‑M2/17‑34 (MQ=255)
                  aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt                 <  1:2273857/35‑1 (MQ=255)
                     cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTg              <  1:5472425/35‑1 (MQ=255)
                       cgttacgagatGGACGGTCCCCTCGCCCCCTTggg            <  1:685423‑M2/24‑1 (MQ=255)
                       aaaaCTGCACCGGACGGTCCCCTCGCCCCTTTggg            <  1:7057530/35‑1 (MQ=255)
                       aaaaCTGCACCGGACGGTCCCCTCGCCCCTTTggg            >  1:2702473/1‑35 (MQ=255)
                        aaaCTGCACCGGACGGTCCCCTCGCCCCTTTgggg           >  1:2198131/1‑35 (MQ=255)
                         ttacgagatGGACGGTCCCCTCGCCCCCTTGGGga          >  1:4508747‑M2/10‑35 (MQ=255)
                         ttacgagatGGACGGTCCCCTCGCCCCCTTGGGga          >  1:4568130‑M2/10‑35 (MQ=255)
                         aaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGga          <  1:1317487/35‑1 (MQ=255)
                         aaCTGCACCGGACGGTCCCCTCGCCCCTTTGGGga          <  1:5393865/35‑1 (MQ=255)
                          tacgagatGGACGGTCCCCTCGCCCCCTTGGGgag         >  1:1218167‑M2/9‑35 (MQ=255)
                          aCTGCACCGGACGGTCCCCTCGCCCCTTTGGGgag         >  1:3720141/1‑35 (MQ=255)
                           cTGCACCGGACGGTCCCCTCGCCCCTTTGGGgaga        >  1:5679956/1‑35 (MQ=255)
                           cTGCACCGGACGGTCCCCTCGCCCCTTTGGGgaga        >  1:7832168/1‑35 (MQ=255)
                           cTGCACCGGACGGTCCCCTCGCCCCTTTGGGgaga        <  1:1893686/35‑1 (MQ=255)
                           acgagatGGACGGTCCCCTCGCCCCCTTGGGgaga        >  1:1725477‑M2/8‑35 (MQ=255)
                            cgagatGGACGGTCCCCTCGCCCCCTTGGGGagag       >  1:174527‑M2/7‑35 (MQ=255)
                             gagatGGACGGTCCCCTCGCCCCCTTGGGGAGAgg      >  1:5993141‑M2/6‑35 (MQ=255)
                              cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg     >  1:1175941/1‑35 (MQ=255)
                              cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg     >  1:2496746/1‑35 (MQ=255)
                              cACCGGACGGTCCCCTCGCCCCTTTGGGGAGAggg     <  1:4565158/35‑1 (MQ=255)
                               aCCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGt    <  1:7145034/35‑1 (MQ=255)
                                ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGtt   <  1:1609362/35‑1 (MQ=255)
                                ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGtt   >  1:5877797/1‑35 (MQ=255)
                                ccGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGtt   <  1:1064573/35‑1 (MQ=255)
                                 cGGACGGTCCCCTCGCCCCTTTGGGGAGGGGGTTa  >  1:4054889/1‑35 (MQ=255)
                                 cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa  <  1:3177990/35‑1 (MQ=40)
                                 cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa  <  1:3704799/35‑1 (MQ=40)
                                 cGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTa  <  1:5122805/35‑1 (MQ=40)
                                  |                                 
CCGTGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTTGGGGAGAGGGTTA  >  NC_000913/4070410‑4070477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.