| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 117 [0] | [0] 114 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 95 (1.540) | 38/58 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 122 total aligned reads displayed.
TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565016‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > NC_000913/586109‑586142 TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT < 1:5900044/35‑1 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:1933585/1‑35 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:6542884/35‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:3707395/35‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:4327859/35‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:381788/35‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:4257143/1‑35 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:2023882/35‑1 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC < 1:5357693/35‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:3292087/1‑35 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:5310002/35‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:5829975/35‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:707495/35‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:674568/35‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:6712192/35‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC > 1:1524573/1‑35 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC > 1:5203009/1‑35 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC < 1:1236968/35‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTC < 1:3424649/35‑1 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:7223986/35‑1 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:3872808/35‑1 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA < 1:876947/35‑1 GTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:5231803/35‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT < 1:2355306/35‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT < 1:3910874/35‑1 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:3705786/1‑35 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT < 1:303765/35‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA > 1:98233/1‑35 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTA > 1:6360333/1‑35 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATG > 1:2623375/1‑35 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATG < 1:5147054/35‑1 TGAGGTCATGGAAACGGAAATCTTCCTCATTTATG > 1:1982848/1‑35 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGC < 1:1320847/35‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:6245519/1‑35 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:4271634/1‑35 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:5903680/1‑35 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:6706413/1‑35 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:7458874/35‑1 GGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:3192444/35‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCG > 1:354917/1‑35 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCG < 1:2835666/35‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCG < 1:1281406/35‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCG > 1:5061255/1‑35 TCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:3184182/1‑35 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:4688575/1‑35 ATGGAAACGGAAATCTTCCTCATTTATGGCCGTCT < 1:4767848/35‑1 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:6888670/1‑35 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:6621216/1‑35 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:6083148/35‑1 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:5556803/35‑1 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:3047329/35‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT > 1:1169519/1‑35 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:4276021/35‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:7085720/35‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:4374385/35‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:6532015/35‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:3009739/35‑1 GGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA < 1:2757337/35‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:3198721/1‑35 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:1328385/35‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:1839151/1‑35 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT > 1:5374296/1‑35 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:424849/35‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:5445453/35‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:6975604/35‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:3019775/35‑1 AAACGGAAATCTTCCTCATTTATGCCCGTCTTATC < 1:4195992/35‑1 AACGGAAATCTTCCTCATTTATGCCTGTCTTATCC > 1:1880124/1‑35 AACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:2162124/1‑35 AACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:2512299/1‑35 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:3443717/35‑1 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG > 1:1707981/1‑35 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT < 1:1615484/35‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT < 1:6594016/35‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:7108961/1‑35 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT < 1:7107707/35‑1 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:3901125/1‑35 GAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:5935630/1‑35 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC > 1:4220852/1‑35 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC < 1:691882/35‑1 AAATCTTCCTCATTTATGCCCCTCTTATCCGTTTC < 1:2670935/35‑1 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:6395658/1‑35 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG > 1:959583/1‑35 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGC > 1:5230454/1‑35 CTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT < 1:4044741/35‑1 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:3893483/35‑1 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:347710/35‑1 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:6279748/35‑1 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT > 1:2995672/1‑35 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT > 1:6243841/1‑35 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:1731663/35‑1 TCCTCGTTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:2066771/35‑1 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT > 1:3674592/1‑35 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:3701955/35‑1 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT > 1:4012315/1‑35 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:7035233/35‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:4654448/35‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > 1:1619232/1‑35 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:7231795/35‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG < 1:3120944/35‑1 TGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565016‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTG > NC_000913/586109‑586142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |