| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 117 [0] | [0] 114 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 95 (1.540) | 38/58 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 117 total aligned reads displayed.
CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGAT > NC_000913/565020‑565088 | cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:2023882‑M1/35‑1 (MQ=255)cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC > 1:4257143‑M1/1‑35 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:5357693‑M1/35‑2 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:2889748‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:3292087‑M1/1‑33 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:3656122‑M1/1‑33 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:2542212‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:5075579‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:5829975‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:6712192‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:674568‑M1/35‑3 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:707495‑M1/35‑3 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctc > 1:5203009‑M1/1‑32 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctc < 1:3424649‑M1/35‑4 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctc < 1:1236968‑M1/35‑4 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctca < 1:3872808‑M1/35‑5 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctca < 1:7223986‑M1/35‑5 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctca < 1:876947‑M1/35‑5 (MQ=255) gtgtCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:5231803‑M1/35‑6 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:3910874‑M1/35‑7 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:3705786‑M1/1‑29 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:2355306‑M1/35‑7 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatt < 1:303765‑M1/35‑7 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcattta > 1:98233‑M1/1‑27 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:7083325‑M1/35‑10 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatg > 1:1982848‑M1/1‑25 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:5147054‑M1/35‑11 (MQ=255) tGAGGTCATGGAAACGGAAATCTTCctcatttatg > 1:2623375‑M1/1‑25 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgc < 1:1320847‑M1/35‑12 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:6245519‑M1/1‑23 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:5822097‑M1/35‑13 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:7458874‑M1/35‑13 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgccc < 1:3192444‑M1/35‑14 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:2835666‑M1/35‑15 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:1281406‑M1/35‑15 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:6916247‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:6070498‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccg > 1:354917‑M1/1‑21 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:4688575‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatggccgtct < 1:4767848‑M1/35‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct > 1:7318787‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct < 1:6083148‑M1/35‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct < 1:5556803‑M1/35‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct < 1:5266330‑M1/35‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct > 1:6888670‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct > 1:6621216‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct > 1:6394082‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtct < 1:3047329‑M1/35‑18 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtctt > 1:1169519‑M1/1‑17 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtctt > 1:4364908‑M1/1‑17 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:6532015‑M1/35‑20 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:4374385‑M1/35‑20 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:4276021‑M1/35‑20 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:3009739‑M1/35‑20 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:7085720‑M1/35‑20 (MQ=255) ggAAACGGAAATCTTCctcatttatgcccgtctta < 1:2757337‑M1/35‑20 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat > 1:1839151‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat > 1:5374296‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat < 1:424849‑M1/35‑21 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat < 1:4011675‑M1/35‑21 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat > 1:1413357‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat < 1:1328385‑M1/35‑21 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat > 1:3213581‑M1/1‑15 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttat > 1:3198721‑M1/1‑15 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatc < 1:6975604‑M1/35‑22 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatc < 1:5445453‑M1/35‑22 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatc < 1:3019775‑M1/35‑22 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatc < 1:4195992‑M1/35‑22 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatcc > 1:2162124‑M1/1‑13 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccg > 1:1707981‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccg < 1:3443717‑M1/35‑24 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgt > 1:2000899‑M1/1‑11 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgt < 1:1615484‑M1/35‑25 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgttt > 1:7108961‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgttt > 1:5935630‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgttt < 1:7107707‑M1/35‑27 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgttt > 1:3901125‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgttt < 1:6594016‑M1/35‑27 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttc > 1:3086788‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttc > 1:3742800‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttc < 1:691882‑M1/35‑28 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttc > 1:4220852‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttc > 1:180782‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccctcttatccgtttc < 1:2670935‑M1/35‑28 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccg > 1:6606735‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccg > 1:6395658‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccg > 1:959583‑M1/1‑6 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgc > 1:5230454‑M1/1‑5 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctt < 1:6279748‑M1/35‑33 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctt < 1:3893483‑M1/35‑33 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctt < 1:1731663‑M1/35‑33 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctt > 1:6243841‑M1/1‑3 (MQ=255) tCctcgtttatgcccgtcttatccgtttccgcttt < 1:2066771‑M1/35‑34 (MQ=255) tCctcatttatgcccgtcttatccgtttccgcttt > 1:4012315‑M1/1‑2 (MQ=255) tCctcatttatgcccgtcttatccgtttccgcttt > 1:3674592‑M1/1‑2 (MQ=255) tCctcatttatgcccgtcttatccgtttccgcttt < 1:3701955‑M1/35‑34 (MQ=255) tCctcatttatgcccgtcttatccgtttccgcttt < 1:4234579‑M1/35‑34 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttg > 1:1619232‑M1/1‑1 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttg < 1:3120944‑M1/35‑35 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttg < 1:4654448‑M1/35‑35 (MQ=255) | CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGAT > NC_000913/565020‑565088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |