| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 133 [0] | [0] 130 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 126 (1.850) | 48/64 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 133 total aligned reads displayed.
ATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/729330‑729364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGC > NC_000913/738963‑738996 ATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:3983577/35‑1ATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:4465239/35‑1 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:6926199/1‑35 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:4797977/1‑35 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:7491463/1‑35 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:6926198/1‑35 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC < 1:5609408/35‑1 TTTTTATTGATTGCTGAGTTTTGAATACATTGAAC > 1:1688025/1‑35 TTTTATTGATTGCTGAGTTTTGAATACATTGAACG < 1:3050239/35‑1 TTTATTGATTGCTGAGTTTTGAATACATTGAACGT > 1:4258105/1‑35 TTTATTGATTGCTGAGTTTTGAATACATTGAACGT > 1:1355141/1‑35 TTATTGATTGCTGAGTTTTGAATACATTGAACGTC < 1:7094521/35‑1 TTATTGATTGCTGAGTTTTGAATACATTGAACGTC > 1:5663767/1‑35 TTATTGATTGCTGAGTTTTGAATACATTGAACGTC > 1:4069769/1‑35 TTATTGATTGCTGAGTTTTGAATACATTGAACGTC > 1:723740/1‑35 TTATTGATTGCTGAGTTTTGAATACATTGAACGTC < 1:6939137/35‑1 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:2042331/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:6649184/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:5297158/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:452309/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:5085220/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:5003899/1‑35 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT < 1:1032000/35‑1 TATTGATTGCTGAGTTTTGAATACATTGAACGTCT > 1:1533594/1‑35 ATTGATTGCTGAGTTTTGAATACATTGAACGTCTA < 1:191581/35‑1 ATTGATTGCTGAGTTTTGAATACATTGAACGTCTA > 1:5855656/1‑35 TTGATTGCTGAGTTTTGAATACATTGAACGTCTAC > 1:7007332/1‑35 TGATTGCTGAGTTTTGAATACATTGAACGTCTACA > 1:1423052/1‑35 TGATTGCTGAGTTTTGAATACATTGAACGTCTACA > 1:4600246/1‑35 GATTGCTGAGTTTTGAATACATTGAACGTCTACAC > 1:6499960/1‑35 GATTGCTGAGTTTTGAATACATTGAACGTCTACAC > 1:1825527/1‑35 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT > 1:6034240/1‑35 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT < 1:6340061/35‑1 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT < 1:6273591/35‑1 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT > 1:5628830/1‑35 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT < 1:1045049/35‑1 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT > 1:7232637/1‑35 ATTGCTGAGTTTTGAATACATTGAACGTCTACACT < 1:247775/35‑1 TTGCTGAGTTTTGAATACATTGAACGTCTACACTT > 1:5082722/1‑35 TTGCTGAGTTTTGAATACATTGAACGTCTACACTT > 1:4923316/1‑35 TTGCTGAGTTTTGAATACATTGAACGTCTACACTT > 1:6197151/1‑35 TTGCTGAGTTTTGAATACATTGAACGTCTACACTT > 1:2987514/1‑35 TGCTGAGTTTTGAATACATTGAACGTCTACACTTA < 1:7714449/35‑1 TGCTGAGTTTTGAATACATTGAACGTCTACACTTA > 1:744003/1‑35 TGCTGAGTTTTGAATACATTGAACGTCTACACTTA < 1:3717561/35‑1 TGCTGAGTTTTGAATACATTGAACGTCTACACTTA < 1:7097227/35‑1 GCTGAGTTTTGAATACATTGAACGTCTACACTTAC < 1:2004134/35‑1 GCTGAGTTTTGAATACATTGAACGTCTACACTTAC < 1:809342/35‑1 CTGAGTTTTGAATACATTGAACGTCTACACTTACT < 1:1620801/35‑1 CTGAGTTTTGAATACATTGAACGTCTACACTTACT > 1:782182/1‑35 CTGAGTTTTGAATACATTGAACGTCTACACTTACT > 1:5346531/1‑35 TGAGTTTTGAATACATTGAACGTCTACACTTACTC < 1:5542466/35‑1 AGTTTTGAATACATTGAACGTCTACACTTACTCCT > 1:6016041/1‑35 AGTTTTGAATACATTGAACGTCTACACTTACTCCT > 1:6227242/1‑35 GTTTTGAATACATTGAACGTCTACACTTACTCCTG < 1:2750062/35‑1 TTTTGAATACATTGAACGTCTACACTTACTCCTGT < 1:7438988/35‑1 TTTTGAATACATTGAACGTCTACACTTACTCCTGT < 1:7268700/35‑1 TTTTGAATACATTGAACGTCTACACTTACTCCTGT < 1:2194556/35‑1 TTTGAATACATTGAACGTCTACACTTACTCCTGTA > 1:2504382/1‑35 TTTGAATACATTGAACGTCTACACTTACTCCTGTA > 1:2927266/1‑35 TTGAATACATTGAACGTCTACACTTACTCCTGTAA > 1:3616143/1‑35 TTGAATACATTGAACGTCTACACTTACTCCTGTAA > 1:4292641/1‑35 TTGAATACATTGAACGTCTACACTTACTCCTGTAA > 1:4428669/1‑35 TTGAATACATTGAACGTCTACACTTACTCCTGTAA > 1:7873499/1‑35 TTGAATACATTGAACGTCTACACTTACTCCTGTAA > 1:7183708/1‑35 TGAATACATTGAACGTCTACACTTACTCCTGTAAA < 1:3307418/35‑1 TGAATACATTGAACGTCTACACTTACTCCTGTAAA > 1:6549063/1‑35 TGAATACATTGAACGTCTACACTTACTCCTGTAAA > 1:4193496/1‑35 TGAATACATTGAACGTCTACACTTACTCCTGTAAA < 1:5435566/35‑1 TGAATACATTGAACGCCTACACTTACTCCTGTAAA > 1:4489659/1‑35 GAATACATTGAACGTCTACACTTACTCCTGTAAAC > 1:4038160/1‑35 AATACATTGAACGTCTACACTTACTCCTGTAAACC > 1:801189/1‑35 AATACATTGAACGTCTACACTTACTCCTGTAAACC > 1:4831645/1‑35 AATACATTGAACGTCTACACTTACTCCTGTAAACC > 1:593510/1‑35 AATACATTGAACGTCTACACTTACTCCTGTAAACC > 1:4705527/1‑35 ATACATTGAACGTCTACACTTACTCCTGTAAACCG > 1:4223828/1‑35 ATACATTGAACGTCTACACTTACTCCTGTAAACCG > 1:6243688/1‑35 ATACATTGAACGTCTACACTTACTCCTGTAAACCG < 1:540396/35‑1 ATACATTGAACGTCTACACTTACTCCTGTAAACCG > 1:158841/1‑35 ATACATTGAACGTCTACACTTACTCCTGTAAACCG > 1:4406262/1‑35 TACATTGAACGTCTACACTTACTCCTGTAAACCGC > 1:2109182/1‑35 ACATTGAACGTCTACACTTACTCCTGTAAACCGCT > 1:269208/1‑35 ACATTGAACGTCTACACTTACTCCTGTAAACCGCT < 1:4254575/35‑1 ACATTGAACGTCTACACTTACTCCTGTAAACCGCT < 1:598464/35‑1 CATTGAACGTCTACACTTACTCCTGTAAACCGCTC > 1:4262757/1‑35 CATTGAACGTCTACACTTACTCCTGTAAACCGCTC > 1:4655764/1‑35 CATTGAACGTCTACACTTACTCCTGTAAACCGCTC < 1:3111358/35‑1 CATTGAACGTCTACACTTACTCCTGTAAACCGCTC > 1:3080992/1‑35 ATTGAACGTCTACACTTACTCCTGTAAACCGCTCA > 1:4437063/1‑35 TTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:1461351/1‑35 TTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:6466861/1‑35 TTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:2624446/1‑35 TTGAACGTCTACACTTACTCCTGTAAACCGCTCAG > 1:3228740/1‑35 TGAACGTCTACACTTACTCCTGTAAACCGCTCAGG > 1:7191192/1‑35 TGAACGTCTACACTTACTCCTGTAAACCGCTCAGG < 1:5606882/35‑1 GAACGTCTACACTTACTCCTGTAAACCGCTCAGGA > 1:1670121/1‑35 GAACGTCTACACTTACTCCTGTAAACCGCTCAGGA > 1:5107870/1‑35 AACGTCTACACTTACTCCTGTAAACCGCTCAGGAG < 1:7206788/35‑1 AACGTCTACACTTACTCCTGTAAACCGCTCAGGAG > 1:834122/1‑35 ACGTCTACACTTACTCCTGTAAACCGCTCAGGAGC > 1:3576543/1‑35 ATTTTTATTGATTGCTGAGTTTTGAATACATTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/729330‑729364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaCGTCTACACTTACTCCTGTAAACCGCTCAGGAGC > NC_000913/738963‑738996 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |