| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 133 [0] | [0] 130 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 126 (1.850) | 48/64 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 133 total aligned reads displayed.
ATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTAT > NC_000913/729330‑729398 | aTTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:3983577‑M1/35‑1 (MQ=255)aTTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:4465239‑M1/35‑1 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc > 1:6926199‑M1/1‑34 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc > 1:4797977‑M1/1‑34 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc > 1:7491463‑M1/1‑34 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc > 1:6926198‑M1/1‑34 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc < 1:5609408‑M1/35‑2 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAc > 1:1688025‑M1/1‑34 (MQ=255) ttttATTGATTGCTGAGTTTTGAATACATTGAAcg < 1:3050239‑M1/35‑3 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgt > 1:4258105‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgt > 1:1355141‑M1/1‑32 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtc < 1:7094521‑M1/35‑5 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:5663767‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:4069769‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtc > 1:723740‑M1/1‑31 (MQ=255) ttATTGATTGCTGAGTTTTGAATACATTGAAcgtc < 1:6939137‑M1/35‑5 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:2042331‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:6649184‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:5297158‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:452309‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:5085220‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:5003899‑M1/1‑30 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:1032000‑M1/35‑6 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtct > 1:1533594‑M1/1‑30 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtcta < 1:191581‑M1/35‑7 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtcta > 1:5855656‑M1/1‑29 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctac > 1:7007332‑M1/1‑28 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctaca > 1:1423052‑M1/1‑27 (MQ=255) tgattgCTGAGTTTTGAATACATTGAAcgtctaca > 1:4600246‑M1/1‑27 (MQ=255) gattgCTGAGTTTTGAATACATTGAAcgtctacac > 1:6499960‑M1/1‑26 (MQ=255) gattgCTGAGTTTTGAATACATTGAAcgtctacac > 1:1825527‑M1/1‑26 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact > 1:6034240‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact < 1:6340061‑M1/35‑11 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact < 1:6273591‑M1/35‑11 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact > 1:5628830‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact < 1:1045049‑M1/35‑11 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact > 1:7232637‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacact < 1:247775‑M1/35‑11 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacactt > 1:5082722‑M1/1‑24 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacactt > 1:4923316‑M1/1‑24 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacactt > 1:6197151‑M1/1‑24 (MQ=255) ttgCTGAGTTTTGAATACATTGAAcgtctacactt > 1:2987514‑M1/1‑24 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacactta < 1:7714449‑M1/35‑13 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacactta > 1:744003‑M1/1‑23 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacactta < 1:3717561‑M1/35‑13 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacactta < 1:7097227‑M1/35‑13 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:2004134‑M1/35‑14 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttac < 1:809342‑M1/35‑14 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttact < 1:1620801‑M1/35‑15 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttact > 1:782182‑M1/1‑21 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttact > 1:5346531‑M1/1‑21 (MQ=255) tGAGTTTTGAATACATTGAAcgtctacacttactc < 1:5542466‑M1/35‑16 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcct > 1:6016041‑M1/1‑18 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcct > 1:6227242‑M1/1‑18 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctg < 1:2750062‑M1/35‑19 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgt < 1:7438988‑M1/35‑20 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgt < 1:7268700‑M1/35‑20 (MQ=255) ttttGAATACATTGAAcgtctacacttactcctgt < 1:2194556‑M1/35‑20 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgta > 1:2504382‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgta > 1:2927266‑M1/1‑15 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaa > 1:3616143‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaa > 1:4292641‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaa > 1:4428669‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaa > 1:7873499‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaa > 1:7183708‑M1/1‑14 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaa < 1:3307418‑M1/35‑23 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaa > 1:6549063‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaa > 1:4193496‑M1/1‑13 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaa < 1:5435566‑M1/35‑23 (MQ=255) tGAATACATTGAAcgcctacacttactcctgtaaa > 1:4489659‑M1/1‑13 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaac > 1:4038160‑M1/1‑12 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaacc > 1:801189‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaacc > 1:4831645‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaacc > 1:593510‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaacc > 1:4705527‑M1/1‑11 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccg > 1:4223828‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccg > 1:6243688‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccg < 1:540396‑M1/35‑26 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccg > 1:158841‑M1/1‑10 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccg > 1:4406262‑M1/1‑10 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgc > 1:2109182‑M1/1‑9 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgct > 1:269208‑M1/1‑8 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgct < 1:4254575‑M1/35‑28 (MQ=255) aCATTGAAcgtctacacttactcctgtaaaccgct < 1:598464‑M1/35‑28 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctc > 1:4262757‑M1/1‑7 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctc > 1:4655764‑M1/1‑7 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctc < 1:3111358‑M1/35‑29 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctc > 1:3080992‑M1/1‑7 (MQ=255) aTTGAAcgtctacacttactcctgtaaaccgctca > 1:4437063‑M1/1‑6 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcag > 1:1461351‑M1/1‑5 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcag > 1:6466861‑M1/1‑5 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcag > 1:2624446‑M1/1‑5 (MQ=255) ttGAAcgtctacacttactcctgtaaaccgctcag > 1:3228740‑M1/1‑5 (MQ=255) tGAAcgtctacacttactcctgtaaaccgctcagg > 1:7191192‑M1/1‑4 (MQ=255) tGAAcgtctacacttactcctgtaaaccgctcagg < 1:5606882‑M1/35‑32 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcagga > 1:1670121‑M1/1‑3 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcagga > 1:5107870‑M1/1‑3 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggag < 1:7206788‑M1/35‑34 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggag > 1:834122‑M1/1‑2 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagc > 1:3576543‑M1/1‑1 (MQ=255) | ATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTAT > NC_000913/729330‑729398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |