| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 95 [0] | [0] 89 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 84 (1.200) | 39/66 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040467‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTA > NC_000913/1114265‑1114298 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:6603804/35‑1TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:6364159/35‑1TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:1168081/1‑35TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:4883855/35‑1TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:3047523/1‑35TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:5482829/1‑35TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:5500752/35‑1TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:1998488/35‑1TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:7227697/1‑35 GGCATTTTGTTGATGTGTTCGCTCTCCACCCTTCA > 1:7497892/1‑35 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:7664565/35‑1 GCATTTTGTTGATGTGTTCGCTCTCCACCCTTCAG < 1:5189887/35‑1 CATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGT < 1:4738654/35‑1 ATTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTT < 1:4490274/35‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:3096033/35‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:5755800/1‑35 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC > 1:7003021/1‑35 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:3649880/35‑1 TTTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTC < 1:1310490/35‑1 TTTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCG < 1:2600601/35‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA < 1:4465541/35‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:3012465/1‑35 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA < 1:3512083/35‑1 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA > 1:7435917/1‑35 TTGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGA < 1:6181605/35‑1 TGTTGATGTGTTCGCTCTCCACCCTTCAGTTCGAT > 1:644854/1‑35 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:1240691/35‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:429328/35‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:200886/35‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:2241145/1‑35 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA < 1:7594821/35‑1 GTTGATGTGTTCGCTCTCCACCCTTCAGTTCGATA > 1:5858070/1‑35 TTGATGTGTTCGCTCTCCACCTTTCAGTTCGATAC < 1:1150963/35‑1 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:5448875/1‑35 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC > 1:2173080/1‑35 TTGATGTGTTCGCTCTCCACCCTTCAGTTCGATAC < 1:3926735/35‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:6664323/35‑1 TGATGTGTTCGCTCTCCACCCTTCAGTTCGATACC < 1:3481270/35‑1 GATGTGTTCGCTCTCCACCCTTCAGTTCGATACCT > 1:649383/1‑35 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:6140195/1‑35 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG < 1:2253309/35‑1 ATGTGTTCGCTCTCCACCCTTCAGTTCGATACCTG > 1:7115204/1‑35 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:5697292/1‑35 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:3817296/1‑35 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:6118805/1‑35 TGTGTTCGCTCTCCACCCTTCAGTTCGATACCTGG > 1:1607774/1‑35 GTGTTCGCTCTCCACCCTTCAGTTCGATACCTGGG < 1:3484290/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:5460531/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:3500732/1‑35 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:4433196/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:2150092/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:2852699/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:300077/1‑35 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG < 1:3009311/35‑1 TGTTCGCTCTCCACCCTTCAGTTCGATACCTGGGG > 1:7106023/1‑35 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:6078696/1‑35 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:2114514/1‑35 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:401798/1‑35 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:4683647/1‑35 TTCGCTCTCCACCCTTCAGTTCGATACCTGGGGTA > 1:4044782/1‑35 TCGCTCTCCACCCTTCAGTTCGATACCTGGGGTAT < 1:7173258/35‑1 CGCTCTCCTCCCTTCAGTTCGATACCTGGGGTATT < 1:470371/35‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:6966000/35‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:2771291/35‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT > 1:2369619/1‑35 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:6274830/35‑1 CGCTCTCCACCCTTCAGTTCGATACCTGGGGTATT < 1:5849109/35‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:7875177/35‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:763921/35‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:566889/35‑1 GCTCTCCACCCTTCAGTTCGATACCTGGGGTATTC < 1:4085451/35‑1 CTCTCCACCCTTCAGTTCGATACCTGGGGTATTCG < 1:7370185/35‑1 TCTCCACCCTTCAGTTCGATACCTGGGGTATTCGA > 1:1397329/1‑35 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:3877276/35‑1 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC < 1:1456028/35‑1 CTCCACCCTTCAGTTCGATACCTGGGGTATTCGAC > 1:1932006/1‑35 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACG > 1:7494857/1‑35 TCCACCCTTCAGTTCGATACCTGGGGTATTCGACG > 1:6813228/1‑35 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:1320433/35‑1 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGA > 1:4172871/1‑35 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:3154302/35‑1 CCACCCTTCAGTTCGATACCTGGGGTATTCGACGA < 1:2410869/35‑1 CACCCTTCAGTTCGATACCTGGGGTATTCGACGAC < 1:3110311/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:1028527/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:774664/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:3042678/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:3532546/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:4494856/35‑1 CCCTTCAGTTCGATACCTGGGGTATTCGACGACGA < 1:4603301/35‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACG > 1:7556781/1‑35 CTTCAGTTCGATACCTGGGGTATTCGACGACGACG < 1:1142622/35‑1 CTTCAGTTCGATACCTGGGGTATTCGACGACGACG < 1:5765713/35‑1 TTCAGTTCGATACCTGGGGTATTCGACGACGACGT > 1:4397043/1‑35 TCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:1313341/35‑1 TCAGTTCGATACCTGGGGTATTCGACGACGACGTA < 1:5549564/35‑1 TCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1040467‑1040501‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGTTCGATACCTGGGGTATTCGACGACGACGTA > NC_000913/1114265‑1114298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |