| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | Δ25,940 bp | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223076 | 25940 | 78 [0] | [11] 65 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 51 (0.730) | 20/66 | 0.8 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223077 = | 0 (0.000) | coding (87/174 nt) | ymgI | uncharacterized protein YmgI | |||||
CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197102‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGATAATTCAAAA > NC_000913/1223077‑1223090 CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:4976609/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:5809048/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:369056/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:6264778/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:6421808/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:691917/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:2738385/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:4909880/35‑1CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT < 1:4909948/35‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:932827/35‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:2846687/35‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATC < 1:7125779/35‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATC > 1:5206685/1‑35 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1552003/35‑1 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:2958731/35‑1 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:7393997/35‑1 GATTTTAGTAATCTCTTGATGCTAAGAACTATCAG < 1:2853909/35‑1 GATTTTAGGAATCTCTTGATGCTAAGAACTATCAG < 1:785657/35‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA < 1:1448111/35‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA < 1:7315149/35‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:7154966/1‑35 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:6728421/1‑35 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA < 1:5789090/35‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA < 1:1618695/35‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:7259323/1‑35 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:6054594/1‑35 TTTAGTAATCTCTTGATGCTAAGAACTATCAGATA > 1:7163928/1‑35 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:6731353/35‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:3186756/35‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:7089592/1‑35 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:1305454/35‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:1091108/1‑35 TAGTAATCTCTTGATGCTAAGAACTATCAGATAAT < 1:6227422/35‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAAT < 1:1213969/35‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:464314/1‑35 TAGTAATCTCTTGATGCTAAGAACTATCAGATAAT < 1:2755562/35‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:4969068/1‑35 AGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:6181067/35‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:1546776/1‑35 GTAATCTCTTGATGCTAAGAACTATCCGATAATTC > 1:2561814/1‑35 GTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:4897917/1‑35 GTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:153109/35‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:3160546/1‑35 TAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:5809882/1‑35 TAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:4580797/35‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:7571108/1‑35 TAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:6284201/1‑35 TAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:7038947/35‑1 AATCTCTTGATGCTAAGAACTATCAGATAATTCAA > 1:2351520/1‑35 AATCTCTTGATGCTAAGAACTATCAGATAATTCAA > 1:1771959/1‑35 gTCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:1275416/2‑35 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:1466304/1‑35 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:1275368/1‑35 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:2610237/1‑35 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:2832837/1‑35 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:4401343/35‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAA > 1:4636635/1‑35 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAg > 1:3422620/1‑34 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAg < 1:3468191/35‑2 TCTCTTGATGCTAAGAACTATCAGATAATTCAAAg > 1:6217493/1‑34 CCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197102‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCAGATAATTCAAAA > NC_000913/1223077‑1223090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |