| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | Δ25,940 bp | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223076 | 25940 | 78 [0] | [11] 65 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 51 (0.730) | 20/66 | 0.8 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223077 = | 0 (0.000) | coding (87/174 nt) | ymgI | uncharacterized protein YmgI | |||||
AGATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAG > NC_000913/1223043‑1223111 | ctgattttagtaatctcttgatgctaagaactatc < 1:932827‑M2/1‑1 (MQ=255)ctgattttagtaatctcttgatgctaagaactatc < 1:7125779‑M2/1‑1 (MQ=255)ctgattttagtaatctcttgatgctaagaactatc > 1:5206685‑M2/35‑35 (MQ=255)ctgattttagtaatctcttgatgctaagaactatc < 1:2846687‑M2/1‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatCa < 1:2958731‑M2/2‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatCa < 1:7393997‑M2/2‑1 (MQ=255) tgattttagtaatctcttgatgctaagaactatCa < 1:1552003‑M2/2‑1 (MQ=255) gattttagtaatctcttgatgctaagaactatCAg < 1:2853909‑M2/3‑1 (MQ=255) gattttaggaatctcttgatgctaagaactatCAg < 1:785657‑M2/3‑1 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa < 1:5789090‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa < 1:7315149‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa > 1:7259323‑M2/32‑35 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa < 1:1618695‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa > 1:6054594‑M2/32‑35 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa > 1:6728421‑M2/32‑35 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa < 1:1448111‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatCAGa > 1:7154966‑M2/32‑35 (MQ=255) tttagtaatctcttgatgctaagaactatCAGATa > 1:7163928‑M2/30‑35 (MQ=255) ttagtaatctcttgatgctaagaactatCAGATaa < 1:1305454‑M2/7‑1 (MQ=255) ttagtaatctcttgatgctaagaactatCAGATaa > 1:1091108‑M2/29‑35 (MQ=255) ttagtaatctcttgatgctaagaactatCAGATaa < 1:6731353‑M2/7‑1 (MQ=255) ttagtaatctcttgatgctaagaactatCAGATaa < 1:3186756‑M2/7‑1 (MQ=255) ttagtaatctcttgatgctaagaactatCAGATaa > 1:7089592‑M2/29‑35 (MQ=255) tagtaatctcttgatgctaagaactatCAGATAAt < 1:1213969‑M2/8‑1 (MQ=255) tagtaatctcttgatgctaagaactatCAGATAAt > 1:464314‑M2/28‑35 (MQ=255) tagtaatctcttgatgctaagaactatCAGATAAt < 1:2755562‑M2/8‑1 (MQ=255) tagtaatctcttgatgctaagaactatCAGATAAt < 1:6227422‑M2/8‑1 (MQ=255) agtaatctcttgatgctaagaactatCAGATAAtt > 1:4969068‑M2/27‑35 (MQ=255) agtaatctcttgatgctaagaactatCAGATAAtt > 1:1546776‑M2/27‑35 (MQ=255) agtaatctcttgatgctaagaactatCAGATAAtt < 1:6181067‑M2/9‑1 (MQ=255) gtaatctcttgatgctaagaactatCCGATAATTc > 1:2561814‑M2/26‑35 (MQ=255) gtaatctcttgatgctaagaactatCAGATAATTc < 1:153109‑M2/10‑1 (MQ=255) gtaatctcttgatgctaagaactatCAGATAATTc > 1:4897917‑M2/26‑35 (MQ=255) gtaatctcttgatgctaagaactatCAGATAATTc > 1:3160546‑M2/26‑35 (MQ=255) taatctcttgatgctaagaactatCAGATAATTCa > 1:7571108‑M2/25‑35 (MQ=255) taatctcttgatgctaagaactatCAGATAATTCa < 1:4580797‑M2/11‑1 (MQ=255) taatctcttgatgctaagaactatCAGATAATTCa > 1:6284201‑M2/25‑35 (MQ=255) taatctcttgatgctaagaactatCAGATAATTCa > 1:5809882‑M2/25‑35 (MQ=255) taatctcttgatgctaagaactatCAGATAATTCa < 1:7038947‑M2/11‑1 (MQ=255) aatctcttgatgctaagaactatCAGATAATTCaa > 1:2351520‑M2/24‑35 (MQ=255) aatctcttgatgctaagaactatCAGATAATTCaa > 1:1771959‑M2/24‑35 (MQ=255) gtctcttgatgctaagaactatCAGATAATTCaaa > 1:1275416‑M2/23‑35 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa > 1:1275368‑M2/23‑35 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa > 1:4636635‑M2/23‑35 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa < 1:4401343‑M2/13‑1 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa > 1:2610237‑M2/23‑35 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa > 1:1466304‑M2/23‑35 (MQ=255) atctcttgatgctaagaactatCAGATAATTCaaa > 1:2832837‑M2/23‑35 (MQ=255) tctcttgatgctaagaactatCAGATAATTcaaag > 1:6217493‑M2/22‑34 (MQ=255) tctcttgatgctaagaactatCAGATAATTcaaag < 1:3468191‑M2/14‑2 (MQ=255) tctcttgatgctaagaactatCAGATAATTcaaag > 1:3422620‑M2/22‑34 (MQ=255) atcAGATAATTCAAAgcgtggctgtgatgatagga > 1:6098993‑M1/2‑15 (MQ=255) atcAGATAATTCAAAgcgtggctgtgatgatagga > 1:1322301‑M1/2‑15 (MQ=255) atcAGATAATTCAAAgcgtggctgggatgatagga > 1:1757663‑M1/2‑15 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:7293419‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:4431885‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa < 1:535161‑M1/35‑22 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:4724031‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:4228867‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:3499093‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa > 1:2109429‑M1/1‑14 (MQ=255) tCAGATAATTCAAAgcgtggctgtgatgataggaa < 1:1163172‑M1/35‑22 (MQ=255) cAGATAATTCAAAgcgtggctgtgatgataggaat < 1:684722‑M1/35‑23 (MQ=255) cAGATAATTCAAAgcgtggctgtgatgataggaat < 1:499972‑M1/35‑23 (MQ=255) cAGATAATTCAAAgcgtggctgtgatgataggaat < 1:3789439‑M1/35‑23 (MQ=255) | AGATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAG > NC_000913/1223043‑1223111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |