| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1326780 | 80 (1.110) | 4 (0.090) | 3/44 | 3.6 | 7.7% | intergenic (+139/‑72) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase |
| ? | NC_000913 | = 1326787 | 44 (0.940) | intergenic (+146/‑65) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1326735‑1326780‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgagtcagaACTTACATCTGACTCACTGATAGTAAAGTCTGTT < NC_000913/1326787‑1326754 TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATC > 1:381973/1‑35TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATC < 1:3945793/35‑1TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATC < 1:132709/35‑1TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATC < 1:5248654/35‑1TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATC < 1:5773073/35‑1 TAAGGCCTGAAGAGTTCAAACAGACTTTACTATCA > 1:4079509/1‑35 TAAGGCCTGAAGAGTTCAAACAGACTTTACTATCA > 1:4940201/1‑35 AAGGCCTGAAGAGTTCAAACAGACTTTACTATCAG > 1:2754683/1‑35 AAGGCCTGAAGAGTTCAAACAGACTTTACTATCAG > 1:7344829/1‑35 AAGGCCTGAAGAGTTCAAACAGACTTTACTATCAG > 1:7555350/1‑35 AAGGCCTGAAGAGTTCAAACAGACTTTACTATCAG < 1:1273278/35‑1 AAGGCCTGAAGAGTTCAAACAGACTTTACTATCAG < 1:1119493/35‑1 AGGCCTGAAGAGTTCAAACAGACTTTACTATCAGT > 1:2499042/1‑35 AGGCCTGAAGAGTTCAAACAGACTTTACTATCAGT < 1:4422958/35‑1 AGGCCTGAAGAGTTCAAACAGACTTTACTATCAGT > 1:762066/1‑35 AGGCCTGAAGAGTTCAAACAGACTTTACTATCAGT < 1:3873178/35‑1 CCTGAAGAGTTCAAACAGACTTTACTATCAGTGAG < 1:4901978/35‑1 CCTGAAGAGTTCAAACAGACTTTACTATCAGTGAG > 1:542414/1‑35 GAAGAGTTCAAACAGACTTTACTATCAGTGAGTCA > 1:4564822/1‑35 AAGAGTTCAAACAGACTTTACTATCAGTGAGTCAG > 1:1898985/1‑35 AAGAGTTCAAACAGACTTTACTATCAGTGAGTCAG > 1:6720923/1‑35 AGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA > 1:2442524/1‑35 AGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA < 1:6629232/35‑1 AGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA < 1:307117/35‑1 AGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA > 1:4582975/1‑35 AACAGACTTTACTATCAGTGAGTCAGAACTTACAT > 1:3541980/1‑35 ACAGACTTTACTATCAGTGAGTCAGAACTTACATC > 1:6695261/1‑35 TTACTATCAGTGAGTCAGAACTTACATCTGACTCA > 1:266175/1‑35 TACTATCAGGGAGTCAGAACTTACATTTGACTCAa > 1:7402401/1‑34 CAGTGAGTCAGAACTTACATCTGACTCACTGATAG > 1:576367/1‑35 CAGTGAGTCAGAACTTACATCTGACTCACTGATAG > 1:5619232/1‑35 CAGTGAGTCAGAACTTACATCTGACTCACTGATAG > 1:2842544/1‑35 CAGTGAGTCAGAACTTACATCTGACTCACTCATAG < 1:941036/35‑1 AGTGAGTCAGAACTTACATCTGACTCACTGATAGT < 1:1113493/35‑1 AGTGAGTCAGAACTTACATCTGACTCACTGATAGT < 1:378793/35‑1 AGTGAGTCAGAACTTACATCTGACTCACTGATAGT < 1:755006/35‑1 AGTGAGTCAGAACTTACATCTGACTCACTGATAGT < 1:6238458/35‑1 AGTGAGTCAGAACTTACATCTGACTCACTGATAGT < 1:7016539/35‑1 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA < 1:2771679/35‑1 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA < 1:5527510/35‑1 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA > 1:883989/1‑35 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA > 1:2848090/1‑35 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA < 1:3311323/35‑1 GTGAGTCAGAACTTACATCTGACTCACTGATAGTA < 1:4107691/35‑1 TGAGTCAGAACTTACATCTGACTCACTGATAGTAA < 1:7042540/35‑1 GAGTCAGAACTTACATCTGACTCACTGATAGTAAA > 1:5430808/1‑35 GAGTCAGAACTTACATCTGACTCACTGATAGTAAA < 1:6987311/35‑1 GAGTCAGAACTTACATCTGACTCACTGATAGTAAA < 1:6069949/35‑1 AGTCAGAACTTACATCTGACTCACTGATAGTAAAG > 1:2047288/1‑35 GTCAGAACTTACATCTGACTCACTGATAGTAAAGT < 1:7228117/35‑1 GTCAGAACTTACATCTGACTCACTGATAGTAAAGT < 1:5077035/35‑1 TCAGAACTTACATCTGACTCACTGATAGTAAAGTC < 1:6401350/35‑1 TCAGAACTTACATCTGACTCACTGATAGTAAAGTC > 1:5815159/1‑35 AGAACTTACATCTGACTCACTGATAGTAAAGTCTG > 1:4264990/1‑35 AGAACTTACATCTGACTCACTGATAGTAAAGTCTG < 1:6508376/35‑1 GAACTTACATCTGACTCACTGATAGTAAAGTCTGT < 1:4091867/35‑1 GAACTTACATCTGACTCACTGATAGTAAAGTCTGT < 1:3807376/35‑1 AACTTACATCTGACTCACTGATAGTAAAGTCTGTT > 1:3562303/1‑35 AACTTACATCTGACTCACTGATAGTAAAGTCTGTT < 1:5960994/35‑1 TTAAGGCCTGAAGAGTTCAAACAGACTTTACTATCAGTGAGTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1326735‑1326780‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgagtcagaACTTACATCTGACTCACTGATAGTAAAGTCTGTT < NC_000913/1326787‑1326754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |