| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1326780 | 80 (1.110) | 4 (0.090) | 3/44 | 3.6 | 7.7% | intergenic (+139/‑72) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase |
| ? | NC_000913 | = 1326787 | 44 (0.940) | intergenic (+146/‑65) | yciQ/rluB | DUF2207 domain‑containing protein YciQ/23S rRNA pseudouridine(2605) synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACAGACTTTACTATCAGTGAGTCAGATGTAAGTTCTGACTCACTGTTGCACAAAAGCATATCAGAC > NC_000913/1326753‑1326820 | aaaCAGACTTTACTATCAGTGAGTCAGATGTACGt > 1:3219390/1‑35 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt > 1:4714272/1‑35 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt < 1:5149082/35‑1 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt > 1:4437666/1‑35 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt < 1:7283736/35‑1 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt > 1:2393369/1‑35 (MQ=255)aaaCAGACTTTACTATCAGTGAGTCAGATGTAAGt > 1:2493084/1‑35 (MQ=255) aaCAGACTTTACTATCAGTGAGTCAGATGTAAGtt > 1:5960994/1‑35 (MQ=255) aaCAGACTTTACTATCAGTGAGTCAGATGTAAGtt < 1:3562303/35‑1 (MQ=255) aCAGACTTTACTATCAGTGAGTCAGATGTAAGTTc > 1:4091867/1‑35 (MQ=255) aCAGACTTTACTATCAGTGAGTCAGATGTAAGTTc > 1:3807376/1‑35 (MQ=255) cAGACTTTACTATCAGTGAGTCAGATGTAAGTTCt < 1:4264990/35‑1 (MQ=255) cAGACTTTACTATCAGTGAGTCAGATGTAAGTTCt > 1:6508376/1‑35 (MQ=255) gACTTTACTATCAGTGAGTCAGATGTAAGTTCTGa < 1:5815159/35‑1 (MQ=255) gACTTTACTATCAGTGAGTCAGATGTAAGTTCTGa > 1:6401350/1‑35 (MQ=255) aCTTTACTATCAGTGAGTCAGATGTAAGTTCTGAc > 1:5077035/1‑35 (MQ=255) aCTTTACTATCAGTGAGTCAGATGTAAGTTCTGAc > 1:7228117/1‑35 (MQ=255) cTTTACTATCAGTGAGTCAGATGTAAGTTCTGACt < 1:2047288/35‑1 (MQ=255) tttACTATCAGTGAGTCAGATGTAAGTTCTGACTc > 1:6987311/1‑35 (MQ=255) tttACTATCAGTGAGTCAGATGTAAGTTCTGACTc < 1:5430808/35‑1 (MQ=255) tttACTATCAGTGAGTCAGATGTAAGTTCTGACTc > 1:6069949/1‑35 (MQ=255) ttACTATCAGTGAGTCAGATGTAAGTTCTGACTCa > 1:7042540/1‑35 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc > 1:5527510/1‑35 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc > 1:3311323/1‑35 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc < 1:2848090/35‑1 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc < 1:883989/35‑1 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc > 1:2771679/1‑35 (MQ=255) tACTATCAGTGAGTCAGATGTAAGTTCTGACTCAc > 1:4107691/1‑35 (MQ=255) aCTATCAGTGAGTCAGATGTAAGTTCTGACTCACt > 1:7016539/1‑35 (MQ=255) aCTATCAGTGAGTCAGATGTAAGTTCTGACTCACt > 1:6238458/1‑35 (MQ=255) aCTATCAGTGAGTCAGATGTAAGTTCTGACTCACt > 1:378793/1‑35 (MQ=255) aCTATCAGTGAGTCAGATGTAAGTTCTGACTCACt > 1:1113493/1‑35 (MQ=255) aCTATCAGTGAGTCAGATGTAAGTTCTGACTCACt > 1:755006/1‑35 (MQ=255) cTATGAGTGAGTCAGATGTAAGTTCTGACTCACTg > 1:941036/1‑35 (MQ=255) cTATCAGTGAGTCAGATGTAAGTTCTGACTCACTg < 1:576367/35‑1 (MQ=255) cTATCAGTGAGTCAGATGTAAGTTCTGACTCACTg < 1:5619232/35‑1 (MQ=255) cTATCAGTGAGTCAGATGTAAGTTCTGACTCACTg < 1:2842544/35‑1 (MQ=255) aTCAGTGAGTCAGATGTAAGTTCTGACTCACTGtt < 1:173180/35‑1 (MQ=255) aTCAGTGAGTCAGATGTAAGTTCTGACTCACTGtt > 1:6921299/1‑35 (MQ=255) aTCAGTGAGTCAGATGTAAGTTCTGACTCACTGtt > 1:4432599/1‑35 (MQ=255) aTCAGTGAGTCAGATGTAAGTTCTGACTCACTGtt > 1:230177/1‑35 (MQ=255) tCAGTGAGTCAGATGTAAGTTCTGACTCACTGTTg < 1:2689656/35‑1 (MQ=255) tCAGTGAGTCAGATGTAAGTTCTGACTCACTGTTg < 1:1256449/35‑1 (MQ=255) tCAGTGAGTCAGATGTAAGTTCTGACTCACTGTTg > 1:191458/1‑35 (MQ=255) aGTGAGTCAGATGTAAGTTCTGACTCACTGTTGca < 1:5114939/35‑1 (MQ=255) aGTGAGTCAGATGTAAGTTCTGACTCACTGTTGca > 1:1073241/1‑35 (MQ=255) gTGAGTCAGATGTAAGTTCTGACTCACTGTTGcac < 1:1287780/35‑1 (MQ=255) gTGAGTCAGATGTAAGTTCTGACTCACTGTTGcac < 1:3312834/35‑1 (MQ=255) gTGAGTCAGATGTAAGTTCTGACTCACTGTTGcac > 1:5854882/1‑35 (MQ=255) gTGAGTCAGATGTAAGTTCTGACTCACTGTTGcac < 1:4513603/35‑1 (MQ=255) gTGAGTCAGATGTAAGTTCTGACTCACTGTTGcac > 1:5810916/1‑35 (MQ=255) tGAGTCAGATGTAAGTTCTGACTCACTGTTGcaca < 1:4795049/35‑1 (MQ=255) gAGTCAGATGTAAGTTCTGACTCACTGTTGCACaa < 1:1008047/35‑1 (MQ=255) gAGTCAGATGTAAGTTCTGACTCACTGTTGCACaa > 1:901131/1‑35 (MQ=255) aGTCAGATGTAAGTTCTGACTCACTGTTGCACaaa > 1:3195410/1‑35 (MQ=255) gTCAGATGTAAGTTCTGACTCACTGTTGCACaaaa < 1:5752095/35‑1 (MQ=255) gTCAGATGTAAGTTCTGACTCACTGTTGCACaaaa > 1:6549854/1‑35 (MQ=255) aGATGTAAGTTCTGACTCACTGTTGCACAAAAGCa < 1:2675504/35‑1 (MQ=255) aGATGTAAGTTCTGACTCACTGTTGCACAAAAGCa > 1:6811873/1‑35 (MQ=255) aGATGTAAGTTCTGACTCACTGTTGCACAAAAGCa > 1:4599555/1‑35 (MQ=255) aGATGTAAGTTCTGACTCACTGTTGCACAAAAGCa > 1:6753361/1‑35 (MQ=255) gATGTAAGTTCTGACTCACTGTTGCACAAAAGCat > 1:4808584/1‑35 (MQ=255) gATGTAAGTTCTGACTCACTGTTGCACAAAAGCat < 1:5062063/35‑1 (MQ=255) gATGTAAGTTCTGACTCACTGTTGCACAAAAGCat > 1:7820103/1‑35 (MQ=255) gATGTAAGTTCTGACTCACTGTTGCACAAAAGCat > 1:2672005/1‑35 (MQ=255) gATGTAAGTTCTGACTCACTGTTGCACAAAAGCat < 1:3931086/35‑1 (MQ=255) aTGTAAGTTCTGACTCACTGTTGCACAAAAGCata < 1:3359669/35‑1 (MQ=255) aTGTAAGTTCTGACTCACTGTTGCACAAAAGCata > 1:2181313/1‑35 (MQ=255) tGTAAGTTCTGACTCACTGTTGCACAAAAGCatat > 1:4166147/1‑35 (MQ=255) tGTAAGTTCTGACTCACTGTTGCACAAAAGCatat > 1:2879980/1‑35 (MQ=255) tGTAAGTTCTGACTCACTGTTGCACAAAAGCatat < 1:4616536/35‑1 (MQ=255) tGTAAGTTCTGACTCACTGTTGCACAAAAGCatat < 1:5847799/35‑1 (MQ=255) tGTAAGTTCTGACTCACTGTTGCACAAAAGCatat < 1:112351/35‑1 (MQ=255) gTAAGTTCTGACTCACTGTTGCACAAAAGCATATc > 1:514977/1‑35 (MQ=255) tAAGTTCTGACTCACTGTTGCACAAAAGCATATCa > 1:3177211/1‑35 (MQ=255) tAAGTTCTGACTCACTGTTGCACAAAAGCATATCa < 1:2493174/35‑1 (MQ=255) aGTTCTGACTCACTGTTGCACAAAAGCATATCAGa < 1:6548196/35‑1 (MQ=255) aGTTCTGACTCACTGTTGCACAAAAGCATATCAGa > 1:2152023/1‑35 (MQ=255) aGTTCTGACTCACTGTTGCACAAAAGCATATCAGa > 1:4067653/1‑35 (MQ=255) aGTTCTGACTCACTGTTGCACAAAAGCATATCAGa > 1:4450454/1‑35 (MQ=255) gTTCTGACTCACTGTTGCACAAAAGCATATCAGAc > 1:4402204/1‑35 (MQ=255) | AAACAGACTTTACTATCAGTGAGTCAGATGTAAGTTCTGACTCACTGTTGCACAAAAGCATATCAGAC > NC_000913/1326753‑1326820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |