| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 90 [0] | [0] 88 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 87 (1.240) | 44/66 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
TTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388854‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGT > NC_000913/1398623‑1398655 TTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:57363/35‑1TTATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:5543082/35‑1TTATGCTAACTGTCAATAACACAGCAAACGCTATT > 1:5193339/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:7506853/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:3422711/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:3451495/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:3456109/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:7102673/35‑1 TATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:4327564/35‑1 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:442305/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:442338/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:1298934/1‑35 TATGCTAACTGTCAATAACACAGCAAACGCTATTA < 1:6467297/35‑1 ATGCTAACTGTCAATAACACAGCAAACGCTATTAC > 1:2096152/1‑35 ATGCTAACTGTCAATAACACAGCAAACGCTATTAC > 1:5971576/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:1178422/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:6531154/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:5059069/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:7026637/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:6531155/1‑35 TGCTAACTGTCAATAACACAGCAAACGCTATTACA < 1:2214087/35‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACA > 1:7594732/1‑35 GCTAACTGTCAATAACACAGCAAACGCTATTACAG > 1:705369/1‑35 CTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:715985/1‑35 CTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:2465607/1‑35 TAACTGTCAATAACACAGCAAACGCTATTACAGGG > 1:494317/1‑35 ACTGTCAATAACACAGCAAACGCTATTACAGGGTC < 1:512397/35‑1 ACTGTCAATAACACAGCAAACGCTATTACAGGGTC > 1:6949472/1‑35 CTGTCAATAACACAGCAAACGCTATTACAGGGTCT > 1:5428512/1‑35 CTGTCAATAACACAGCAAACGCTATTACAGGGTCT < 1:4983341/35‑1 CTGTCAATAACACAGCAAACGCTATTACAGGGTCT > 1:7857109/1‑35 TGTCAATAACACAGCAAACGCTATTACAGGGTCTC < 1:6982444/35‑1 TGTCAATAACACAGCAAACGCTATTACAGGGTCTC > 1:7002375/1‑35 TGTCAATAACACAGCAAACGCTATTACAGGGTCTC < 1:1946324/35‑1 GTCAATAACACAGCAAACGCTATTACAGGGTCTCC < 1:4478006/35‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCT < 1:2536010/35‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCT < 1:7317585/35‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCT < 1:6135781/35‑1 TCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:4828884/1‑35 TCAATAACACAGCAAACGCTATTACAGGGTCTCCT < 1:6631557/35‑1 CAATAACACAGCAAACGCTATTACAGGGTCTCCTT > 1:5114011/1‑35 CAATAACACAGCAAACGCTATTACAGGGTCTCCTT < 1:921484/35‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:3116933/1‑35 AATAACACAGCAAACGCTATTACAGGGTCTCCTTA < 1:6418228/35‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTA > 1:3099357/1‑35 AATAACACAGCAAACGCTATTACAGGGTCTCCTTA < 1:4282256/35‑1 ATAACACAGCAAACGCTATTACAGGGTCTCCTTAC > 1:4609302/1‑35 ATAACACAGCAAACGCTATTACAGGGTCTCCTTAC > 1:7079007/1‑35 ATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:5743639/35‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACA > 1:5118045/1‑35 TAACACAGCAAACGCTATTACAGGGTCTCCTTACA > 1:5631569/1‑35 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:675223/35‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:3178184/1‑35 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:4189023/35‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:2567035/35‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA < 1:3524384/35‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAA > 1:1541541/1‑35 ACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:4991876/1‑35 ACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:1347138/1‑35 ACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:7545850/35‑1 ACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:479145/35‑1 ACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:4929983/1‑35 ACACAGCAAACGCTATTACAGGGTCTCCTTAAAAa > 1:6213997/1‑34 CACAGCAAACGCTATTACAGGGTCTCCTTACAACA > 1:5279873/1‑35 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAA < 1:6657936/35‑1 CAGCAAACGCTATTACAGGGTCTCCTTACAACAAC < 1:5026824/35‑1 CAGCAAACGCTATTACAGGGTCTCCTTACAACAAC < 1:6685627/35‑1 CAGCAAACGCTATTACAGGGTCTCCTTACAACAAC < 1:3702626/35‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTG > 1:7731771/1‑35 CAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:1691029/1‑35 AAACGCTGTTACAGGGTCTCCTTACAACAACTGTC < 1:2821474/35‑1 AAACGCTATTACAGGGTCTCCTTACAACAACTGTC < 1:5902479/35‑1 AAACGCTATTACAGGGTCTCCTTACAACAACTGTC < 1:7434816/35‑1 AAACGCTATTACAGGGTCTCCTTACAACAACTGTC < 1:2542606/35‑1 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAA < 1:6441658/35‑1 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAA > 1:1943294/1‑35 ACGCTATTACAGGGTCTCCTTACAACAACTGTCAA < 1:2414786/35‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACG < 1:5639038/35‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACG < 1:4763455/35‑1 CTATTACAGGGTCTCCTTACAACAACTGTCAACGC > 1:1247859/1‑35 CTATTACAGGGTCTCCTTACAACAACTGTCAACGC < 1:785167/35‑1 TATTACAGGGTCTCCTTACAACAACTGTCAACGCA > 1:1892211/1‑35 TATTACAGGGTCTCCTTACAACAACTGTCAACGCA > 1:7014314/1‑35 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAG < 1:2248902/35‑1 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:3684309/1‑35 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:616535/1‑35 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:3087359/35‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:2178162/35‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGT < 1:3669718/35‑1 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGT > 1:4026488/1‑35 TTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388854‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGT > NC_000913/1398623‑1398655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |