| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 90 [0] | [0] 88 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 87 (1.240) | 44/66 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
TTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAG > NC_000913/1388854‑1388921 | ttATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:57363‑M1/35‑1 (MQ=255)ttATGCTAACTGTCAATAACACAGCAAACGCTATT < 1:5543082‑M1/35‑1 (MQ=255)ttATGCTAACTGTCAATAACACAGCAAACGCTATT > 1:5193339‑M1/1‑35 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:7506853‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:3422711‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:3451495‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:3456109‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa < 1:7102673‑M1/35‑2 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa < 1:4327564‑M1/35‑2 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:442305‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:442338‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa > 1:1298934‑M1/1‑34 (MQ=255) tATGCTAACTGTCAATAACACAGCAAACGCTATTa < 1:6467297‑M1/35‑2 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTac > 1:2096152‑M1/1‑33 (MQ=255) aTGCTAACTGTCAATAACACAGCAAACGCTATTac > 1:5971576‑M1/1‑33 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:1178422‑M1/1‑32 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:6531154‑M1/1‑32 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:5059069‑M1/1‑32 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:7026637‑M1/1‑32 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:6531155‑M1/1‑32 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca < 1:2214087‑M1/35‑4 (MQ=255) tGCTAACTGTCAATAACACAGCAAACGCTATTaca > 1:7594732‑M1/1‑32 (MQ=255) gCTAACTGTCAATAACACAGCAAACGCTATTacag > 1:705369‑M1/1‑31 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagg > 1:715985‑M1/1‑30 (MQ=255) cTAACTGTCAATAACACAGCAAACGCTATTacagg > 1:2465607‑M1/1‑30 (MQ=255) tAACTGTCAATAACACAGCAAACGCTATTacaggg > 1:494317‑M1/1‑29 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtc < 1:512397‑M1/35‑9 (MQ=255) aCTGTCAATAACACAGCAAACGCTATTacagggtc > 1:6949472‑M1/1‑27 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtct > 1:5428512‑M1/1‑26 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtct < 1:4983341‑M1/35‑10 (MQ=255) cTGTCAATAACACAGCAAACGCTATTacagggtct > 1:7857109‑M1/1‑26 (MQ=255) tGTCAATAACACAGCAAACGCTATTacagggtctc < 1:6982444‑M1/35‑11 (MQ=255) tGTCAATAACACAGCAAACGCTATTacagggtctc > 1:7002375‑M1/1‑25 (MQ=255) tGTCAATAACACAGCAAACGCTATTacagggtctc < 1:1946324‑M1/35‑11 (MQ=255) gTCAATAACACAGCAAACGCTATTacagggtctcc < 1:4478006‑M1/35‑12 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctcct < 1:2536010‑M1/35‑13 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctcct < 1:7317585‑M1/35‑13 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctcct < 1:6135781‑M1/35‑13 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctcct > 1:4828884‑M1/1‑23 (MQ=255) tCAATAACACAGCAAACGCTATTacagggtctcct < 1:6631557‑M1/35‑13 (MQ=255) cAATAACACAGCAAACGCTATTacagggtctcctt > 1:5114011‑M1/1‑22 (MQ=255) cAATAACACAGCAAACGCTATTacagggtctcctt < 1:921484‑M1/35‑14 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctcctta > 1:3116933‑M1/1‑21 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctcctta < 1:6418228‑M1/35‑15 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctcctta > 1:3099357‑M1/1‑21 (MQ=255) aaTAACACAGCAAACGCTATTacagggtctcctta < 1:4282256‑M1/35‑15 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttac > 1:4609302‑M1/1‑20 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttac > 1:7079007‑M1/1‑20 (MQ=255) aTAACACAGCAAACGCTATTacagggtctccttac < 1:5743639‑M1/35‑16 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttaca > 1:5118045‑M1/1‑19 (MQ=255) tAACACAGCAAACGCTATTacagggtctccttaca > 1:5631569‑M1/1‑19 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa < 1:675223‑M1/35‑18 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa > 1:3178184‑M1/1‑18 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa < 1:4189023‑M1/35‑18 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa < 1:2567035‑M1/35‑18 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa < 1:3524384‑M1/35‑18 (MQ=255) aaCACAGCAAACGCTATTacagggtctccttacaa > 1:1541541‑M1/1‑18 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaac > 1:4991876‑M1/1‑17 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaac > 1:1347138‑M1/1‑17 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaac < 1:7545850‑M1/35‑19 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaac < 1:479145‑M1/35‑19 (MQ=255) acacAGCAAACGCTATTacagggtctccttacaac > 1:4929983‑M1/1‑17 (MQ=255) acacAGCAAACGCTATTacagggtctccttaaaaa > 1:6213997‑M1/1‑17 (MQ=255) cacaGCAAACGCTATTacagggtctccttacaaca > 1:5279873‑M1/1‑16 (MQ=255) acaGCAAACGCTATTacagggtctccttacaacaa < 1:6657936‑M1/35‑21 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaac < 1:5026824‑M1/35‑22 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaac < 1:6685627‑M1/35‑22 (MQ=255) caGCAAACGCTATTacagggtctccttacaacaac < 1:3702626‑M1/35‑22 (MQ=255) gCAAACGCTATTacagggtctccttacaacaactg > 1:7731771‑M1/1‑12 (MQ=255) cAAACGCTATTacagggtctccttacaacaactgt > 1:1691029‑M1/1‑11 (MQ=255) aaaCGCTGTTacagggtctccttacaacaactgtc < 1:2821474‑M1/35‑26 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtc < 1:5902479‑M1/35‑26 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtc < 1:7434816‑M1/35‑26 (MQ=255) aaaCGCTATTacagggtctccttacaacaactgtc < 1:2542606‑M1/35‑26 (MQ=255) aCGCTATTacagggtctccttacaacaactgtcaa < 1:6441658‑M1/35‑28 (MQ=255) aCGCTATTacagggtctccttacaacaactgtcaa > 1:1943294‑M1/1‑8 (MQ=255) aCGCTATTacagggtctccttacaacaactgtcaa < 1:2414786‑M1/35‑28 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacg < 1:5639038‑M1/35‑30 (MQ=255) gCTATTacagggtctccttacaacaactgtcaacg < 1:4763455‑M1/35‑30 (MQ=255) cTATTacagggtctccttacaacaactgtcaacgc > 1:1247859‑M1/1‑5 (MQ=255) cTATTacagggtctccttacaacaactgtcaacgc < 1:785167‑M1/35‑31 (MQ=255) tATTacagggtctccttacaacaactgtcaacgca > 1:1892211‑M1/1‑4 (MQ=255) tATTacagggtctccttacaacaactgtcaacgca > 1:7014314‑M1/1‑4 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcag < 1:2248902‑M1/35‑33 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcag > 1:3684309‑M1/1‑3 (MQ=255) aTTacagggtctccttacaacaactgtcaacgcag > 1:616535‑M1/1‑3 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagt < 1:3087359‑M1/35‑34 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagt < 1:2178162‑M1/35‑34 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagt < 1:3669718‑M1/35‑34 (MQ=255) ttacagggtctccttacaacaactgtcaacgcagt > 1:4026488‑M1/1‑2 (MQ=255) | TTATGCTAACTGTCAATAACACAGCAAACGCTATTTGCGCTTAATCCGCAGACCACCGCGACAACAAG > NC_000913/1388854‑1388921 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |