| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 80 [0] | [0] 78 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 76 (1.050) | 39/68 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509528‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTT > NC_000913/1555763‑1555796 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:7485598/1‑35TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA > 1:4010633/1‑35TACACCCGCGCCGGAAGGCGGTTATATGGTTTCTA < 1:7059587/35‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAA > 1:6594767/1‑35 CACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA < 1:1738009/35‑1 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA < 1:505012/35‑1 CCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA < 1:2023168/35‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA < 1:1176558/35‑1 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA < 1:3119704/35‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA < 1:4593053/35‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA < 1:4787606/35‑1 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA < 1:7150458/35‑1 CCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:4044545/1‑35 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACC < 1:6694107/35‑1 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACC > 1:6543130/1‑35 GGAAGGCGGTTATATGGTTTCTAAACAAAAACACC > 1:6209325/1‑35 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCA > 1:4022479/1‑35 GAAGGCGGTTATATGGTTTCTAAACAAAAACACCA > 1:1144009/1‑35 AAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 1:3032689/35‑1 AAGGCGGTTATATGGTTTCTAAACAAAAACACCAT > 1:1027412/1‑35 AGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:5513438/1‑35 AGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:3629817/35‑1 AGGCGGTTATATGGTTTCTAAACAAAAACACCATT > 1:7090527/1‑35 GGCGGTTATATGGTTTCTAAACAAAAACACCATTG < 1:7801422/35‑1 GGCGGTTATATGGTTTCTAAACAAAAACACCATTG > 1:2524535/1‑35 CGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:4850269/35‑1 CGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:3444713/35‑1 CGGTTATATGGTTTCTAAACAAAAACACCATTGCG < 1:4009493/35‑1 GGTTATATGGTTTCTAAACAAAAACACCATTGCGC > 1:678272/1‑35 GTTATATGGTTTCTAAACAAAAACACCATTGCGCA > 1:1141937/1‑35 GTTATATGGTTTCTAAACAAAAACACCATTGCGCA > 1:7704728/1‑35 GTTATATGGTTTCTAAACAAAAACACCATTGCGCA > 1:1287174/1‑35 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:388059/1‑35 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG < 1:3841668/35‑1 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:5501017/1‑35 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:1867390/1‑35 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:1818988/1‑35 TTATATGGTTTCTAAACAAAAACACCATTGCGCAG > 1:44609/1‑35 TATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:7063900/1‑35 TATATGGTTTCTAAACAAAAACACCATTGCGCAGG > 1:6885778/1‑35 TATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:4112207/35‑1 TATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:2922355/35‑1 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:4724181/1‑35 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:1974682/1‑35 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:1966343/1‑35 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:3905771/1‑35 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:4918837/1‑35 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:1681332/1‑35 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCA > 1:5179075/1‑35 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCA > 1:541575/1‑35 TATGGTTTCTAAACAAAAACACCATTGCGCAGGCA > 1:4790835/1‑35 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA < 1:1211350/35‑1 ATGGTTTCTAAACAAAAACACCATTGCGCAGGCAA < 1:7512341/35‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:4814697/1‑35 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:2421912/35‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:6416193/1‑35 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:2177317/1‑35 GGTTTCTAAACAAAAACACCATTGCGCAGGCAATG < 1:2801692/35‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGG > 1:7165300/1‑35 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:2335897/1‑35 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:5868122/1‑35 TTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:4336991/1‑35 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:7874815/35‑1 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:3741597/1‑35 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:3390763/1‑35 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:1730294/1‑35 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGT < 1:1205423/35‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:7058607/35‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTT > 1:5115046/1‑35 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:260776/35‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:2258069/35‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:6657236/35‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:7063476/35‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:6633004/1‑35 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < 1:437633/35‑1 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:7463710/1‑35 TACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509528‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTT > NC_000913/1555763‑1555796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |