| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 80 [0] | [0] 78 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 76 (1.050) | 39/68 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCG > NC_000913/1509527‑1509595 | ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCt > 1:3299614/1‑35 (MQ=255)ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 1:1278264/35‑1 (MQ=255)ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCt < 1:1353701/35‑1 (MQ=255)ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCt > 1:7080619/1‑35 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 1:4010633‑M1/1‑34 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa < 1:7059587‑M1/35‑2 (MQ=255) tACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 1:7485598‑M1/1‑34 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaa > 1:6594767‑M1/1‑33 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:1738009‑M1/35‑4 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa < 1:2023168‑M1/35‑7 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa < 1:505012‑M1/35‑7 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 1:1176558‑M1/35‑8 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 1:3119704‑M1/35‑8 (MQ=255) cgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:4787606‑M1/35‑10 (MQ=255) cgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:4593053‑M1/35‑10 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 1:4044545‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:7150458‑M1/35‑12 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:6694107‑M1/35‑14 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacacc > 1:6209325‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacacc > 1:6543130‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:4022479‑M1/1‑21 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:1144009‑M1/1‑21 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccat > 1:1027412‑M1/1‑20 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccat < 1:3032689‑M1/35‑16 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccatt > 1:5513438‑M1/1‑19 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:3629817‑M1/35‑17 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccatt > 1:7090527‑M1/1‑19 (MQ=255) ggCGGTTATATGGTTTCTaaacaaaaacaccattg > 1:2524535‑M1/1‑18 (MQ=255) ggCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:7801422‑M1/35‑18 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcg < 1:4850269‑M1/35‑20 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcg < 1:3444713‑M1/35‑20 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcg < 1:4009493‑M1/35‑20 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgc > 1:678272‑M1/1‑15 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgca > 1:1141937‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgca > 1:1287174‑M1/1‑14 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgca > 1:7704728‑M1/1‑14 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag > 1:388059‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag < 1:3841668‑M1/35‑23 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag > 1:44609‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag > 1:1818988‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag > 1:1867390‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcag > 1:5501017‑M1/1‑13 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcagg < 1:2922355‑M1/35‑24 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcagg > 1:6885778‑M1/1‑12 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcagg < 1:4112207‑M1/35‑24 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcagg > 1:7063900‑M1/1‑12 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:4918837‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:1681332‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:1966343‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:3905771‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:1974682‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggc > 1:4724181‑M1/1‑11 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggca > 1:5179075‑M1/1‑10 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggca > 1:541575‑M1/1‑10 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggca > 1:4790835‑M1/1‑10 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaa < 1:7512341‑M1/35‑27 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaa < 1:1211350‑M1/35‑27 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:4814697‑M1/1‑8 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:2177317‑M1/1‑8 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:6416193‑M1/1‑8 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaat < 1:2421912‑M1/35‑28 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatg < 1:2801692‑M1/35‑29 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatgg > 1:7165300‑M1/1‑6 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggt > 1:4336991‑M1/1‑5 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggt > 1:5868122‑M1/1‑5 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggt > 1:2335897‑M1/1‑5 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgt > 1:3741597‑M1/1‑3 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgt > 1:3390763‑M1/1‑3 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgt > 1:1730294‑M1/1‑3 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgt < 1:1205423‑M1/35‑33 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgt < 1:7874815‑M1/35‑33 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:7058607‑M1/35‑34 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:5115046‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:260776‑M1/35‑34 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:2258069‑M1/35‑34 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgttt < 1:6657236‑M1/35‑35 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgttt > 1:6633004‑M1/1‑1 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgttt < 1:7063476‑M1/35‑35 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgttt < 1:437633‑M1/35‑35 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgttt > 1:7463710‑M1/1‑1 (MQ=255) | TTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCG > NC_000913/1509527‑1509595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |