| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 93 [0] | [0] 91 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 85 (1.210) | 44/66 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627483‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > NC_000913/1652762‑1652795 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:1120430/1‑35TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:7425186/1‑35TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:4845190/1‑35TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:4647162/1‑35TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:7425136/1‑35 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAA > 1:7597151/1‑35 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAA > 1:2007300/1‑35 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:5545157/1‑35 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:1149007/1‑35 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:309009/1‑35 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:7658509/1‑35 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC > 1:7207216/1‑35 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:2378118/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:1857811/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:2209779/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:2209811/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:5612546/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:1280181/1‑35 GACACACAAAAGCGTTGAGGAACAGTGAGAAGCGC > 1:6938003/1‑35 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCA < 1:5374702/35‑1 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:1395801/1‑35 CACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:3998525/35‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:7137226/1‑35 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG > 1:6727978/1‑35 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:1831491/1‑35 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC < 1:3520656/35‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC < 1:6987568/35‑1 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:7680376/1‑35 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:1985211/1‑35 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC < 1:5655543/35‑1 CAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:6594871/1‑35 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:247642/35‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCC < 1:6391729/35‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:2918911/35‑1 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA > 1:3955347/1‑35 AAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA > 1:7148675/1‑35 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:2443506/1‑35 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC < 1:7175727/35‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCC > 1:7770714/1‑35 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 1:1097971/35‑1 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:6299134/35‑1 GTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:4559114/35‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCGGCCATC < 1:6158020/35‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:6564957/1‑35 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:409801/35‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:4122300/1‑35 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:5458349/1‑35 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC < 1:937617/35‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:4951569/35‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:2630573/35‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC > 1:387251/1‑35 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCC < 1:4301940/35‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:6416488/1‑35 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:7213183/1‑35 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:2662050/35‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:1783406/35‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:7836320/1‑35 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:6426818/1‑35 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:6262296/35‑1 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC > 1:589600/1‑35 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG > 1:5443806/1‑35 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCG > 1:7754316/1‑35 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:4550956/35‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:4489853/35‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:1077611/35‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:2972715/35‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT > 1:5094164/1‑35 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT < 1:2161578/35‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT > 1:292056/1‑35 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGAT < 1:3728662/35‑1 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:6828253/35‑1 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA > 1:2809997/1‑35 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC < 1:5962282/35‑1 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:4744476/1‑35 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC > 1:5018951/1‑35 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATAC < 1:7264162/35‑1 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:5841023/35‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTG < 1:4951330/35‑1 GTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGC < 1:1079249/35‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT > 1:7158200/1‑35 GAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG < 1:495883/35‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC < 1:5323731/35‑1 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:729515/1‑35 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:7176968/1‑35 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:361284/1‑35 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC < 1:4000335/35‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT < 1:2646758/35‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:3716878/1‑35 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:7771404/1‑35 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCT > 1:6155221/1‑35 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:7361837/35‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > 1:2478761/1‑35 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:2077082/35‑1 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627483‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT > NC_000913/1652762‑1652795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |