| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 93 [0] | [0] 91 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 85 (1.210) | 44/66 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
TTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTT > NC_000913/1627483‑1627551 | ttATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:1120430‑M1/1‑35 (MQ=255)ttATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:7425186‑M1/1‑35 (MQ=255)ttATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:4845190‑M1/1‑35 (MQ=255)ttATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:4647162‑M1/1‑35 (MQ=255)ttATTGACACACAAAAGCGTTGAGGAACAGTGAGA > 1:7425136‑M1/1‑35 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAa > 1:7597151‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAa > 1:2007300‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:5545157‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:1149007‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:309009‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:7658509‑M1/1‑33 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagc > 1:7207216‑M1/1‑32 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:2378118‑M1/1‑31 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:1857811‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:2209779‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:2209811‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:5612546‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:1280181‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgc > 1:6938003‑M1/1‑30 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:5374702‑M1/35‑7 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:1395801‑M1/1‑28 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:3998525‑M1/35‑8 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:7137226‑M1/1‑26 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:6727978‑M1/1‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:1831491‑M1/1‑25 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:3520656‑M1/35‑11 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:6987568‑M1/35‑11 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:7680376‑M1/1‑24 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1985211‑M1/1‑24 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc < 1:5655543‑M1/35‑12 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:6594871‑M1/1‑24 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:247642‑M1/35‑13 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:6391729‑M1/35‑13 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:2918911‑M1/35‑14 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgccca > 1:3955347‑M1/1‑22 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgccca > 1:7148675‑M1/1‑22 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:2443506‑M1/1‑21 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagc < 1:7175727‑M1/35‑16 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagcc > 1:7770714‑M1/1‑19 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagcca < 1:1097971‑M1/35‑18 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:6299134‑M1/35‑19 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:4559114‑M1/35‑19 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccggccatc < 1:6158020‑M1/35‑20 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:6564957‑M1/1‑16 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:409801‑M1/35‑20 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:4122300‑M1/1‑16 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:5458349‑M1/1‑16 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:937617‑M1/35‑20 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:4951569‑M1/35‑21 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:2630573‑M1/35‑21 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcc > 1:387251‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:4301940‑M1/35‑21 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:6416488‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:7213183‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2662050‑M1/35‑22 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:1783406‑M1/35‑22 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:7836320‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:6426818‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:6262296‑M1/35‑22 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:589600‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccg > 1:5443806‑M1/1‑13 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccg > 1:7754316‑M1/1‑13 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccga < 1:4550956‑M1/35‑24 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccga < 1:4489853‑M1/35‑24 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccga < 1:1077611‑M1/35‑24 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccga < 1:2972715‑M1/35‑24 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgat > 1:5094164‑M1/1‑11 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgat < 1:2161578‑M1/35‑25 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgat > 1:292056‑M1/1‑11 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgat < 1:3728662‑M1/35‑25 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgata < 1:6828253‑M1/35‑26 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgata > 1:2809997‑M1/1‑10 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatac < 1:5962282‑M1/35‑27 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatac > 1:4744476‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatac > 1:5018951‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatac < 1:7264162‑M1/35‑27 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatact < 1:5841023‑M1/35‑28 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactg < 1:4951330‑M1/35‑29 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgc < 1:1079249‑M1/35‑30 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgct > 1:7158200‑M1/1‑5 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctg < 1:495883‑M1/35‑32 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgc < 1:5323731‑M1/35‑33 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgc > 1:729515‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgc > 1:7176968‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgc > 1:361284‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgc < 1:4000335‑M1/35‑33 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgct < 1:2646758‑M1/35‑34 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgct > 1:3716878‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgct > 1:7771404‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgct > 1:6155221‑M1/1‑2 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctt < 1:7361837‑M1/35‑35 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctt > 1:2478761‑M1/1‑1 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctt < 1:2077082‑M1/35‑35 (MQ=255) | TTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTT > NC_000913/1627483‑1627551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |