| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 139 [1] | [0] 140 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 1 (0.010) | 137 (1.950) | 47/66 | 0.0 | 99.7% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 138 total aligned reads displayed.
TTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962532‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA > NC_000913/1979330‑1979363 TTCACTGAGTTATTAAACATACTCGCGAGCGCGTC > 1:7707115/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:596556/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:5898316/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:1363460/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:1500805/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:1590830/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:3898390/1‑35 TCACTGAGTTATTAAACATACTCGCGAGCGCGTCG > 1:1871158/1‑35 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGC < 1:3434789/35‑1 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:3670590/1‑35 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:5774661/1‑35 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGC > 1:282976/1‑35 CACTGAGTTATTAAACATACTCGCGAGCGCGTCGC < 1:6633933/35‑1 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT > 1:3516841/1‑35 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT > 1:3020628/1‑35 ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT > 1:4845669/1‑35 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:4304036/35‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:5876115/35‑1 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA > 1:7342818/1‑35 CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA < 1:5717501/35‑1 TGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC < 1:5258579/35‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:4828858/35‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:280080/35‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:5924885/35‑1 AGTTATTAAACATACTCGCGAGCGCGTCGCTACGC < 1:3356634/35‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:1700960/35‑1 GTTATTAAACATACTCGCGAGCGCGTCGCTACGCT < 1:6850043/35‑1 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTA > 1:6036601/1‑35 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTA > 1:1091400/1‑35 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTA > 1:5476383/1‑35 TTATTAAACATACTCGCGAGCGCGTCGCTACGCTA < 1:2472671/35‑1 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:7439901/35‑1 TATTAAACATACTCGCGAGCGCGTCGCTACGCTAG < 1:3516074/35‑1 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:5386176/1‑35 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:3184849/1‑35 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:6179213/1‑35 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC > 1:1353254/1‑35 ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC < 1:4248387/35‑1 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA > 1:3361696/1‑35 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA > 1:6188020/1‑35 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA > 1:7316930/1‑35 TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA > 1:7379614/1‑35 TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA < 1:4745577/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGTAAG < 1:2618271/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:6554408/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:7325577/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:7657683/1‑35 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:7831205/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:1044904/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:4219747/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:3548929/1‑35 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:3155776/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:4012181/35‑1 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG > 1:2928258/1‑35 AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG < 1:2618228/35‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:668618/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:5648884/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:5640958/35‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:6723793/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:5205583/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC < 1:1998849/35‑1 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:7437086/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:1207397/1‑35 AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGC > 1:3900852/1‑35 ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA < 1:2657146/35‑1 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA < 1:925258/35‑1 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA > 1:4015626/1‑35 ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA < 1:3824168/35‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:4618208/35‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA < 1:3857638/35‑1 TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA > 1:5319933/1‑35 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:4996236/1‑35 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT < 1:1343899/35‑1 CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT > 1:7334528/1‑35 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:4023873/35‑1 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG > 1:6299299/1‑35 TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG < 1:7034904/35‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA > 1:1209665/1‑35 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:5383540/35‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:2394424/35‑1 CGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGA < 1:6761268/35‑1 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAA > 1:4124702/1‑35 GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAA < 1:1624498/35‑1 CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA > 1:6394467/1‑35 GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAAC < 1:13056/35‑1 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA > 1:511353/1‑35 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA > 1:6123950/1‑35 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA > 1:1518771/1‑35 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA > 1:5538945/1‑35 AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACA > 1:5825973/1‑35 GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG > 1:5281418/1‑35 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA > 1:1011578/1‑35 CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA < 1:7201067/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:4618320/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:4133887/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:841543/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:1825355/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:6764628/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:2974233/35‑1 GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT < 1:5500278/35‑1 TTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1962532‑1962565‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA > NC_000913/1979330‑1979363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |