| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 139 [1] | [0] 140 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 1 (0.010) | 137 (1.950) | 47/66 | 0.0 | 99.7% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
Only 100 of 139 total aligned reads displayed.
TTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCA > NC_000913/1962532‑1962599 | ttCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:7707115‑M1/1‑34 (MQ=255)ttCACTGAGTTATTAAACATACTCGCGAGCGCGTc > 1:6083105‑M1/1‑34 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:5898316‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:3898390‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:596556‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:1363460‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:1500805‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:1590830‑M1/1‑33 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcg > 1:1871158‑M1/1‑33 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc < 1:4730913‑M1/35‑4 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:5774661‑M1/1‑32 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:3670590‑M1/1‑32 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc > 1:282976‑M1/1‑32 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc < 1:6633933‑M1/35‑4 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgc < 1:6698641‑M1/35‑4 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgct < 1:3835495‑M1/35‑5 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgct > 1:7088999‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgct > 1:3516841‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgct > 1:5228171‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgct > 1:4845669‑M1/1‑31 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:4996192‑M1/1‑30 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:4304036‑M1/35‑6 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgcta < 1:5450411‑M1/35‑6 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:7342818‑M1/1‑30 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 1:280080‑M1/35‑9 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 1:3356634‑M1/35‑9 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgc < 1:5924885‑M1/35‑9 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:6850043‑M1/35‑10 (MQ=255) gTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:5846306‑M1/35‑10 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgcta > 1:6036601‑M1/1‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgcta > 1:1091400‑M1/1‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgcta > 1:2561028‑M1/1‑25 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctag < 1:3516040‑M1/35‑12 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctag < 1:3516074‑M1/35‑12 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctag < 1:3643848‑M1/35‑12 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctag < 1:7439901‑M1/35‑12 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagc > 1:5386176‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagc > 1:3184849‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagc > 1:1353254‑M1/1‑23 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagc > 1:6179213‑M1/1‑23 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagca > 1:7379614‑M1/1‑22 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagca > 1:3361696‑M1/1‑22 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagca > 1:6188020‑M1/1‑22 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagca > 1:6506990‑M1/1‑22 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagca > 1:7316930‑M1/1‑22 (MQ=255) taAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:4745577‑M1/35‑15 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagtaag < 1:2618271‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:567974‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:7325577‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag > 1:7657683‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:7831205‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:1044904‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:4219747‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:2618228‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag > 1:2928258‑M1/1‑20 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:3155776‑M1/35‑16 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaag < 1:4012181‑M1/35‑16 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc > 1:1207397‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc > 1:7437086‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc > 1:5205583‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc < 1:1998849‑M1/35‑17 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc > 1:668618‑M1/1‑19 (MQ=255) aaCATACTCGCGAGCGCGTcgctacgctagcaagc > 1:5648884‑M1/1‑19 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:925258‑M1/35‑19 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:1782557‑M1/35‑19 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaa > 1:4155776‑M1/1‑17 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaa < 1:447470‑M1/35‑20 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:3857638‑M1/35‑21 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:4080093‑M1/1‑13 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:1343899‑M1/35‑23 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:7334528‑M1/1‑13 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:5598765‑M1/1‑13 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:4023873‑M1/35‑24 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:4009616‑M1/35‑24 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:7034904‑M1/35‑24 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatg > 1:6299299‑M1/1‑12 (MQ=255) tCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:2670278‑M1/35‑24 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatga < 1:2394424‑M1/35‑25 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatga > 1:1209665‑M1/1‑11 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatga < 1:6761268‑M1/35‑25 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatga < 1:5383540‑M1/35‑25 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1624498‑M1/35‑26 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:6394467‑M1/1‑9 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaac < 1:13056‑M1/35‑28 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaaca > 1:5825973‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaaca > 1:5538945‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaaca > 1:1518771‑M1/1‑7 (MQ=255) aGCGCGTcgctacgctagcaagcaaaaatgaaaca > 1:511353‑M1/1‑7 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacag > 1:5281418‑M1/1‑6 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaa > 1:1011578‑M1/1‑3 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaa < 1:3068003‑M1/35‑33 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:5500278‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:4618320‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:841543‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:1825355‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:6764628‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:2974233‑M1/35‑34 (MQ=255) gTcgctacgctagcaagcaaaaatgaaacaggaat < 1:4133887‑M1/35‑34 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaata < 1:5295281‑M1/35‑35 (MQ=255) tAATTTTTTTGTCCTTCAGCGATAATTCACAATCa > 1:3963936/1‑35 (MQ=255) | TTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCA > NC_000913/1962532‑1962599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |