| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 96 [0] | [0] 94 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 90 (1.240) | 37/68 | 0.0 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
ACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509597‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTAC > NC_000913/2517950‑2517983 ACTAAGTATCTGACCCCGCATAAGGAATAGAACAC > 1:1149019/1‑35ACTAAGTATCTGACCCCGCATAAGGAATAGAACAC > 1:4942773/1‑35ACTAAGTATCTGACCCCGCATAAGGAATAGAACAC > 1:5213927/1‑35ACTAAGTATCTGACCCCGCATAAGGAATAGAACAC > 1:5237509/1‑35 CTAAGTATCTGACCCCGCATAAGGAATAGAACACA > 1:460700/1‑35 TAAGTATCTGACCCCGCATAAGGAATAGAACACAG > 1:565227/1‑35 TAAGTATCTGACCCCGCATAAGGAATAGAACACAG > 1:587740/1‑35 AAGTATCTGACCCCGCATAAGGAATAGAACACAGG < 1:7391600/35‑1 AAGTATCTGACCCCGCATAAGGAATAGAACACAGG > 1:2310328/1‑35 AGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:7813574/1‑35 AGTATCTGACCCCGCATAAGGAATAGAACACAGGC > 1:5722150/1‑35 TATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:3681605/1‑35 TATCTGACCCCGCATAAGGAATAGAACACAGGCGG < 1:3367406/35‑1 TATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:481761/1‑35 TATCTGACCCCGCATAAGGAATAGAACACAGGCGG > 1:6330066/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:7499754/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:826166/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:1126390/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:4498841/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:421483/1‑35 TCTGACCCCGCATAAGGAATAGAACACAGGCGGCA > 1:971029/1‑35 CTGACCCCGCATAAGGAATAGAACACAGGCGGCAC < 1:6596596/35‑1 CTGACCCCGCATAAGGAATAGAACACAGGCGGCAC < 1:4471798/35‑1 TGACCCCGCATAAGGAATAGAACACAGGCGGCACT > 1:2611497/1‑35 TGACCCCGCATAAGGAATAGAACACAGGCGGCACT < 1:3162336/35‑1 GACCCCGCATAAGGAATAGAACACAGGCGGCACTA < 1:889224/35‑1 GACCCCGCATAAGGAATAGAACACAGGCGGCACTA < 1:513542/35‑1 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:2244992/1‑35 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:4825716/1‑35 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:7002718/1‑35 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:4159565/1‑35 ACCCCGCATAAGGAATAGAACACAGGCGGCACTAA > 1:758374/1‑35 CCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:5323114/35‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:5955452/35‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:6046467/35‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:1875888/35‑1 CCCGCATAAGGAATAGAACACAGGCGGCACTAACC < 1:1110729/35‑1 CGCATAAGGAATAGAACACAGGCGGCACTAACCCG > 1:6550042/1‑35 CGCATAAGGAATAGAACACAGGCGGCACTAACCCG > 1:3864667/1‑35 GCATAAGGAATAGAACACAGGCGGCACTAACCCGG > 1:1508613/1‑35 ATAAGGAATAGAACACAGGCGGCACTAACCCGGAC > 1:3307685/1‑35 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:1913655/1‑35 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:6642719/1‑35 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:813048/1‑35 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG < 1:598717/35‑1 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:5352409/1‑35 TAAGGAATAGAACACAGGCGGCACTAACCCGGACG > 1:576438/1‑35 AGGAATAGAACACAGGCGGCACTAACCCGGACGTA > 1:840490/1‑35 AGGAATAGAACACAGGCGGCACTAACCCGGACGTA > 1:6570115/1‑35 AGGAATAGAACACAGGCGGCACTAACCCGGACGTA > 1:769985/1‑35 GGAATAGAACACAGGCGGCACTAACCCGGACGTAG > 1:1145819/1‑35 GGAATAGAACACAGGCGGCACTAACCCGGACGTAG > 1:488503/1‑35 GGAATAGAACACAGGCGGCACTAACCCGGACGTAG > 1:5705972/1‑35 GAATAGAACACAGGCGGCACTAACCCGGACGTAGA < 1:5956015/35‑1 AATAGAACACAGGCGGCACTAACCCGGACGTAGAC < 1:6327931/35‑1 AATAGAACACAGGCGGCACTAACCCGGACGTAGAC > 1:6021996/1‑35 ATAGAACACAGGCGGCACTAACCCGGACGTAGACT > 1:4096594/1‑35 ATAGAACACAGGCGGCACTAACCCGGACGTAGACT > 1:3353873/1‑35 TAGAACACAGGCGGCACTAACCCGGACGTAGACTG < 1:3407677/35‑1 TAGAACACAGGCGGCACTAACCCGGACGTAGACTG > 1:6463985/1‑35 TAGAACACAGGCGGCACTAACCCGGACGTAGACTG > 1:1008186/1‑35 TAGAACACAGGCGGCACTAACCCGGACGTAGACTG > 1:3436114/1‑35 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA > 1:3131102/1‑35 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA < 1:2852103/35‑1 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA > 1:4828482/1‑35 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA > 1:2103016/1‑35 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA < 1:1965367/35‑1 GAACACAGGCGGCACTAACCCGGACGTAGACTGTA > 1:3092049/1‑35 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:676132/35‑1 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:3098837/35‑1 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:6084758/35‑1 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:802071/35‑1 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:2405559/1‑35 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT < 1:784550/35‑1 AACACAGGCGGCACTAACCCGGACGTAGACTGTAT > 1:5672884/1‑35 ACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:344874/35‑1 ACACAGGCGGCACTAACCCGGACGTAGACTGTATT > 1:2045890/1‑35 ACACAGGCGGCACTAACCCGGACGTAGACTGTATT > 1:4934082/1‑35 ACACAGGCGGCACTAACCCGGACGTAGACTGTATT < 1:2429911/35‑1 ACACAGGCGGCACTAACCCGGACGTAGACTGTATT > 1:5387252/1‑35 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:710428/35‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:7719232/35‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:7776464/35‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:4040510/35‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA < 1:5251470/35‑1 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:2553500/1‑35 CACAGGCGGCACTAACCCGGACGTAGACTGTATTA > 1:5215818/1‑35 ACAGGCGGCACTAACCCGGACGTAGACTGTATTAC < 1:4673714/35‑1 ACAGGCGGCACTAACCCGGACGTAGACTGTATTAC < 1:5153878/35‑1 ACAGGCGGCACTAACCCGGACGTAGACTGTATTAC < 1:2809089/35‑1 ACTAAGTATCTGACCCCGCATAAGGAATAGAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2509597‑2509630‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCGGCACTAACCCGGACGTAGACTGTATTAC > NC_000913/2517950‑2517983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |