| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 68 [0] | [0] 68 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 50 (0.900) | 29/52 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
AACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2558657‑2558698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAC > NC_000913/2565489‑2565522 AACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCT > 1:1091913/1‑35AACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCT < 1:4039393/35‑1 ACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTC < 1:5677858/35‑1 ACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTC < 1:4643054/35‑1 ACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTC > 1:3110200/1‑35 ACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTC < 1:2789475/35‑1 CAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCA < 1:6427067/35‑1 CAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCA < 1:3426872/35‑1 AATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAG < 1:5271563/35‑1 AATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAG > 1:2146875/1‑35 ATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGG < 1:2029993/35‑1 TGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGA > 1:1397869/1‑35 TGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGA > 1:3897459/1‑35 TGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG > 1:3168559/1‑35 GGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGG < 1:1605960/35‑1 GGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGG < 1:3408691/35‑1 GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGA > 1:6653517/1‑35 GTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGA > 1:5280303/1‑35 GTCTTTAGTTGCATAAGTCGTTCCCTCAGGAAGGA < 1:7136229/35‑1 CTTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAA < 1:1828535/35‑1 TTTAGTTTCATAAGTCGTTCCCTCAGGAAGGAAAT > 1:3662334/1‑35 TAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC < 1:5379779/35‑1 TAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC > 1:7622232/1‑35 TAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC > 1:4759701/1‑35 TAGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGC > 1:3165566/1‑35 AGTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCG > 1:5374317/1‑35 GTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGA > 1:48797/1‑35 GTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGA > 1:305201/1‑35 GTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGA > 1:2822707/1‑35 GTTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGA > 1:78094/1‑35 TTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAG < 1:5774757/35‑1 TTTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAG > 1:3888368/1‑35 TTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGT < 1:5079985/35‑1 TTCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGT < 1:6996141/35‑1 TCATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTG > 1:6599761/1‑35 CATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA > 1:718134/1‑35 CATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA > 1:1538603/1‑35 CATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA > 1:7161038/1‑35 CATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA > 1:6530784/1‑35 CATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGA > 1:3727566/1‑35 ATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGAT > 1:6220289/1‑35 ATAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGAT < 1:5712979/35‑1 TAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATT > 1:7547320/1‑35 TAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATT > 1:5519552/1‑35 TAAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATT < 1:3052376/35‑1 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT < 1:3822816/35‑1 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT < 1:1444283/35‑1 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT > 1:200748/1‑35 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT < 1:2041532/35‑1 AAGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTT > 1:5514449/1‑35 AGTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTC > 1:6188939/1‑35 GTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCA < 1:3042867/35‑1 GTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCA < 1:1784330/35‑1 GTCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCA < 1:4338371/35‑1 TCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCAC > 1:1194935/1‑35 TCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCAC < 1:2513426/35‑1 TCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCAC < 1:2815594/35‑1 TCGTTCCCTCAGGAAGGAAATGCGAGTGATTTCAC < 1:4356522/35‑1 GTTCCCTCAGGAAGGAAATGCGAGTGATTTCACCG < 1:1324314/35‑1 TTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGc > 1:2804091/1‑34 TTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGT < 1:4557687/35‑1 TTCCCTCAGGAAGGAAATGCGAGTGATTTCACCGT > 1:340540/1‑35 CCCTCAGGAAGGAAATGCGAGTGATTTCACCGTCA > 1:1579104/1‑35 CCTCAGGAAGGAAATGCGAGTGATTTCACCGTCAC < 1:6269760/35‑1 TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCG > 1:2151343/1‑35 TCAGGAAGGAAATGCGAGTGATTTCACCGTCACCG > 1:2387113/1‑35 CAGGAAGGAAATGCGAGTGATTTCACCGTCACCGG < 1:7215175/35‑1 AGGAAGGAAATGCGAGTGATTTCACCGTCACCGGC > 1:4642258/1‑35 GGAAGGAAATGCGAGTGATTTCACCGTCACCGGCA < 1:752545/35‑1 GGAAGGAAATGCGAGTGATTTCACCGTCACCGGCA > 1:4817878/1‑35 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC > 1:1851375/1‑35 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC > 1:6803683/1‑35 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC > 1:5480219/1‑35 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC > 1:4331919/1‑35 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC < 1:6213086/35‑1 GAAGGAAATGCGAGTGATTTCACCGTCACCGGCAC > 1:6208858/1‑35 AAGGAAATGCGAGTGATTTCACCGTCACCGGCACA > 1:6808745/1‑35 AAGGAAATGCGAGTGATTTCACCGTCACCGGCACA > 1:7238788/1‑35 GGAAATGCGAGTGATTTCACCGTCACCGGCACAAC > 1:700714/1‑35 GGAAATGCGAGTGATTTCACCGTCACCGGCACAAC > 1:4413614/1‑35 GGAAATGCGAGTGATTTCACCGTCACCGGCACAAC > 1:568499/1‑35 AACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2558657‑2558698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggaagGAAATGCGAGTGATTTCACCGTCACCGGCACAAC > NC_000913/2565489‑2565522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |