| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 68 [0] | [0] 68 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 50 (0.900) | 29/52 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
AGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC > NC_000913/2565455‑2565523 | ggtctttagtttcataagtcgttccctcaggaagg < 1:1605960‑M2/1‑1 (MQ=255)ggtctttagtttcataagtcgttccctcaggaagg < 1:3408691‑M2/1‑1 (MQ=255) gtctttagtttcataagtcgttccctcaggaagga > 1:6653517‑M2/34‑35 (MQ=255) gtctttagtttcataagtcgttccctcaggaagga > 1:5280303‑M2/34‑35 (MQ=255) gtctttagttgcataagtcgttccctcaggaagga < 1:7136229‑M2/2‑1 (MQ=255) ctttagtttcataagtcgttccctcaggaagGaaa < 1:1828535‑M2/4‑1 (MQ=255) tttagtttcataagtcgttccctcaggaagGAAAt > 1:3662334‑M2/31‑35 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGc > 1:7622232‑M2/29‑35 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGc < 1:5379779‑M2/7‑1 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGc > 1:4759701‑M2/29‑35 (MQ=255) tagtttcataagtcgttccctcaggaagGAAATGc > 1:3165566‑M2/29‑35 (MQ=255) agtttcataagtcgttccctcaggaagGAAATGCg > 1:5374317‑M2/28‑35 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGa > 1:78094‑M2/27‑35 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGa > 1:48797‑M2/27‑35 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGa > 1:305201‑M2/27‑35 (MQ=255) gtttcataagtcgttccctcaggaagGAAATGCGa > 1:2822707‑M2/27‑35 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAg < 1:5774757‑M2/10‑1 (MQ=255) tttcataagtcgttccctcaggaagGAAATGCGAg > 1:3888368‑M2/26‑35 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGt < 1:5079985‑M2/11‑1 (MQ=255) ttcataagtcgttccctcaggaagGAAATGCGAGt < 1:6996141‑M2/11‑1 (MQ=255) tcataagtcgttccctcaggaagGAAATGCGAGTg > 1:6599761‑M2/24‑35 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGa > 1:718134‑M2/23‑35 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGa > 1:7161038‑M2/23‑35 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGa > 1:1538603‑M2/23‑35 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGa > 1:3727566‑M2/23‑35 (MQ=255) cataagtcgttccctcaggaagGAAATGCGAGTGa > 1:6530784‑M2/23‑35 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGAt < 1:5712979‑M2/14‑1 (MQ=255) ataagtcgttccctcaggaagGAAATGCGAGTGAt > 1:6220289‑M2/22‑35 (MQ=255) taagtcgttccctcaggaagGAAATGCGAGTGAtt > 1:7547320‑M2/21‑35 (MQ=255) taagtcgttccctcaggaagGAAATGCGAGTGAtt > 1:5519552‑M2/21‑35 (MQ=255) taagtcgttccctcaggaagGAAATGCGAGTGAtt < 1:3052376‑M2/15‑1 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:3822816‑M2/16‑1 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:1444283‑M2/16‑1 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGAttt < 1:2041532‑M2/16‑1 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:5514449‑M2/20‑35 (MQ=255) aagtcgttccctcaggaagGAAATGCGAGTGAttt > 1:200748‑M2/20‑35 (MQ=255) agtcgttccctcaggaagGAAATGCGAGTGATTtc > 1:6188939‑M2/19‑35 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:3042867‑M2/18‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:1784330‑M2/18‑1 (MQ=255) gtcgttccctcaggaagGAAATGCGAGTGATTtca < 1:4338371‑M2/18‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTtcac > 1:1194935‑M2/17‑35 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:2815594‑M2/19‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:2513426‑M2/19‑1 (MQ=255) tcgttccctcaggaagGAAATGCGAGTGATTtcac < 1:4356522‑M2/19‑1 (MQ=255) gttccctcaggaagGAAATGCGAGTGATTtcaccg < 1:1324314‑M2/21‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATttcaccgc > 1:2804091‑M2/14‑34 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTtcaccgt < 1:4557687‑M2/22‑1 (MQ=255) ttccctcaggaagGAAATGCGAGTGATTtcaccgt > 1:340540‑M2/14‑35 (MQ=255) ccctcaggaagGAAATGCGAGTGATTtcaccgtca > 1:1579104‑M2/12‑35 (MQ=255) cctcaggaagGAAATGCGAGTGATTtcaccgtcac < 1:6269760‑M2/25‑1 (MQ=255) tcaggaagGAAATGCGAGTGATTtcaccgtcaccg > 1:2151343‑M2/9‑35 (MQ=255) tcaggaagGAAATGCGAGTGATTtcaccgtcaccg > 1:2387113‑M2/9‑35 (MQ=255) caggaagGAAATGCGAGTGATTTCACCGTCACCgg < 1:7215175‑M2/28‑1 (MQ=255) aggaagGAAATGCGAGTGATTTCACCGTCACCGGc > 1:4642258‑M2/7‑35 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGca > 1:4817878‑M2/6‑35 (MQ=255) ggaagGAAATGCGAGTGATTTCACCGTCACCGGca < 1:752545‑M2/30‑1 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:6208858‑M2/5‑35 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:1851375‑M2/5‑35 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:5480219‑M2/5‑35 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:6803683‑M2/5‑35 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac > 1:4331919‑M2/5‑35 (MQ=255) gaagGAAATGCGAGTGATTTCACCGTCACCGGcac < 1:6213086‑M2/31‑1 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGcaca > 1:6808745‑M2/4‑35 (MQ=255) aagGAAATGCGAGTGATTTCACCGTCACCGGcaca > 1:7238788‑M2/4‑35 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:4413614‑M2/2‑35 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:568499‑M2/2‑35 (MQ=255) gGAAATGCGAGTGATTTCACCGTCACCGGCACAAc > 1:700714‑M2/2‑35 (MQ=255) gaaATGCGAGTGATTTCACCGTCACCGGCACAAcc < 1:4265247/35‑1 (MQ=255) | AGCGCCACCGCTGGCGAATACCGCATTCAGGAAGGAAATGCGAGTGATTTCACCGTCACCGGCACAACC > NC_000913/2565455‑2565523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |