| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2643100 | 68 (0.940) | 9 (0.210) | 4/40 | 2.8 | 15.2% | intergenic (‑256/+29) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase |
| ? | NC_000913 | = 2643110 | 60 (1.410) | intergenic (‑266/+19) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACAATTGCAACTTAATACTTCATTCATAAAACATTACGCCACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2643055‑2643100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattacgccacggtTACTTTATGTACCGTGGCGTAATGTTTTATGAAT < NC_000913/2643110‑2643077 GACAATTGCAACTTAATACTTCATTCATAAAACAT < 1:931291/35‑1GACAATTGCAACTTAATACTTCATTCATAAAACAT < 1:404975/35‑1GACAATTGCAACTTAATACTTCATTCATAAAACAT < 1:6473770/35‑1GACAATTGCAACTTAATACTTCATTCATAAAACAT < 1:7238540/35‑1GACAATTGCAACTTAATACTTCATTCATAAAACAT < 1:6523136/35‑1 ACAATTGCAACTTAATACTTCATTCATAAAACATT < 1:4222736/35‑1 ACAATTGCAACTTAATACTTCATTCATAAAACATT < 1:5603868/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:213647/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:3000922/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:2908891/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:2512661/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:5728747/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:7105917/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:2121823/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:1266312/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:7784667/35‑1 CAATTGCAACTTAATACTTCATTCATAAAACATTA < 1:7815063/35‑1 AATTGCAACTTAATACTTCATTCATAAAACATTAC < 1:1641241/35‑1 AATTGCAACTTAATACTTCATTCATAAAACATTAC > 1:3360898/1‑35 ATTGCAACTTAATACTTCATTCATAAAACATTACG < 1:7169657/35‑1 ATTGCAACTTAATACTTCATTCATAAAACATTACG < 1:7442357/35‑1 ATTGCAACTTAATACTTCATTCATAAAACATTACG > 1:1580529/1‑35 ATTGCAACTTAATACTTCATTCATAAAACATTACG > 1:4983654/1‑35 ATTGCAACTTAATACTTCATTCATAAAACATTACG > 1:4199368/1‑35 ATTGCAACTTAATACTTCATTCATAAAACATTACG > 1:7611381/1‑35 TTGCAACTTAATACTTCATTCATAAAACATTACGC > 1:4001771/1‑35 TTGCAACTTAATACTTCATTCATAAAACATTACGC < 1:4034707/35‑1 TTGCAACTTAATACTTCATTCATAAAACATTACGC < 1:1103184/35‑1 TTGCAACTTAATACTTCATTCATAAAACATTACGC < 1:4034747/35‑1 TTGCAACTTAATACTTCATTCATAAAACATTACGC > 1:6965186/1‑35 TTGCAACTTAATACTTCATTCATAAAACATTACGC < 1:7560302/35‑1 TTGCAACTTAATACTTCATTCATAAAACATTACGC > 1:3840717/1‑35 TTGCAACTTAATACTTCATTCATAAAACATTACGC > 1:1135854/1‑35 TTGCAACTTAATACTTCATTCATAAAACATTACGC < 1:2368144/35‑1 TGCAACTTAATACTTCATTCATAAAACATTACGCC > 1:5428123/1‑35 TGCAACTTAATACTTCATTCATAAAACATTACGCC < 1:3747588/35‑1 TGCAACTTAATACTTCATTCATAAAACATTACGCC < 1:6562241/35‑1 TGCAACTTAATACTTCATTCATAAAACATTACGCC > 1:2611742/1‑35 CAACTTAATACTTCATTCATAAAACATTACGCCAC > 1:7044064/1‑35 CAACTTAATACTTCATTCATAAAACATTACGCCAC > 1:1149128/1‑35 AACTTAATACTTCATTCATAAAACATTACGCCACG > 1:7191548/1‑35 ACTTAATACTTCATTCATAAAACATTACGCCACGG > 1:7826221/1‑35 CTTAATACTTCATTCATAAAACATTACGCCACGGT > 1:4664043/1‑35 CTTAATACTTCATTCATAAAACATTACGCCACGGT > 1:1672787/1‑35 CTTAATACTTCATTCATAAAACATTACGCCACGGT > 1:7634958/1‑35 CTTAATACTTCATTCATAAAACATTACGCCACGGT < 1:5386407/35‑1 CTTAATACTTCATTCATAAAACATTACGCCACGGT > 1:6580005/1‑35 TAATACTTCATTCATAAAACATTACGCCCCGGTTc > 1:7675261/1‑34 TTCATAAAACATTACGCCACGGTTACTTTATGTAC > 1:7718151/1‑35 CATAAAACATTACGCCACGGTTACTTTATGTACCG > 1:6977407/1‑35 AAACATTACGCCACGGTTACTTTATGTACCGTGGC > 1:2528831/1‑35 AAACATTACGCCACGGTTACTTTATGTACCGTGGC > 1:6843073/1‑35 AAACATTACGCCACGGTTACTTTATGTACCGCGGC > 1:6999870/1‑35 AACATTACGCCACGGTTACTTTATGTACCGTGGCG > 1:503751/1‑35 AACATTACGCCACGGTTACTTTATGTACCGTGGCG > 1:2166206/1‑35 AACATTACGCCACGGTTACTTTATGTACCGTGGCG > 1:913179/1‑35 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA < 1:7459286/35‑1 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA < 1:1561974/35‑1 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA < 1:247668/35‑1 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA > 1:7357877/1‑35 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA > 1:2114044/1‑35 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA > 1:5724380/1‑35 ATTACGCCACGGTTACTTTATGTACCGTGGCGTAA < 1:4301264/35‑1 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT < 1:587529/35‑1 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:4975507/1‑35 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:2776228/1‑35 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:7839852/1‑35 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:4038905/1‑35 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:3746293/1‑35 TTACGCCACGGTTACTTTATGTACCGTGGCGTAAT > 1:3930003/1‑35 TACGCCACGGTTACTTTATGTACCGTGGCGTAATG < 1:1052627/35‑1 TACGCCACGGTTACTTTATGTACCGTGGCGTAATG < 1:6652071/35‑1 ACGCCACGGTTACTTTATGTACCGTGGCGTAATGT > 1:7051231/1‑35 ACGCCACGGTTACTTTATGTACCGTGGCGTAATGT < 1:2382411/35‑1 CGCCACGGTTACTTTATGTACCGTGGCGTAATGTT < 1:7031354/35‑1 CGCCACGGTTACTTTATGTACCGTGGCGTAATGTT > 1:6704550/1‑35 CGCCACGGTTACTTTATGTACCGTGGCGTAATGTT > 1:6573050/1‑35 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:3749042/35‑1 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:2979956/35‑1 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:7843581/35‑1 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:4082735/35‑1 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:7531794/35‑1 GCCACGGTTACTTTATGTACCGTGGCGTAATGTTT < 1:6934856/35‑1 CACGGTTACTTTATGTACCGTGGCGTAATGTTTTA < 1:4866105/35‑1 ACGGTTACTTTATGTACCGTGGCGTAATGTTTTAT < 1:4237055/35‑1 ACGGTTACTTTATGTACCGTGGCGTAATGTTTTAT < 1:7869849/35‑1 CGGTTACTTTATGTACCGTGGCGTAATGTTTTATG < 1:1171008/35‑1 CGGTTACTTTATGTACCGTGGCGTAATGTTTTATG > 1:5231189/1‑35 CGGTTACTTTATGTACCGTGGCGTAATGTTTTATG < 1:2151242/35‑1 CGGTTACTTTATGTACCGTGGCGTAATGTTTTATG < 1:2135476/35‑1 GGTTACTTTATGTACCGTGGCGTAATGTTTTATGA > 1:7782956/1‑35 GTTACTTTATGTACCGTGGCGTAATGTTTTATGAA > 1:6092563/1‑35 GTTACTTTATGTACCGTGGCGTAATGTTTTATGAA > 1:1989860/1‑35 TTACTTTATGTACCGTGGCGTAATGTTTTATGAAT > 1:922741/1‑35 GACAATTGCAACTTAATACTTCATTCATAAAACATTACGCCACGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2643055‑2643100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattacgccacggtTACTTTATGTACCGTGGCGTAATGTTTTATGAAT < NC_000913/2643110‑2643077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |