| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2643100 | 68 (0.940) | 9 (0.210) | 4/40 | 2.8 | 15.2% | intergenic (‑256/+29) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase |
| ? | NC_000913 | = 2643110 | 60 (1.410) | intergenic (‑266/+19) | rodZ/rlmN | transmembrane component of cytoskeleton/23S rRNA m(2)A2503 methyltransferase/tRNA m(2)A37 methyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 111 total aligned reads displayed.
CATTCATAAAACATTACGCCACGGTACATAAAGTAACCGTGGCGTAATGGCTATCAGACCGCTTTAATG > NC_000913/2643076‑2643144 | cattcatAAAACATTACGCCACGGTACATAAAGTa > 1:2743308/1‑35 (MQ=255)cattcatAAAACATTACGCCACGGTACATAAAGTa > 1:2319024/1‑35 (MQ=255)cattcatAAAACATTACGCCACGGTACATAAAGTa > 1:3228598/1‑35 (MQ=255)cattcatAAAACATTACGCCACGGTACATAAAGTa > 1:1965950/1‑35 (MQ=255) ttCATAAAACATTACGCCACGGTACATAAAGTAac > 1:6092563‑M2/1‑33 (MQ=255) ttCATAAAACATTACGCCACGGTACATAAAGTAac > 1:1989860‑M2/1‑33 (MQ=255) tCATAAAACATTACGCCACGGTACATAAAGTAacc > 1:7782956‑M2/1‑32 (MQ=255) cATAAAACATTACGCCACGGTACATAAAGTAaccg < 1:1171008‑M2/35‑5 (MQ=255) cATAAAACATTACGCCACGGTACATAAAGTAaccg < 1:2151242‑M2/35‑5 (MQ=255) cATAAAACATTACGCCACGGTACATAAAGTAaccg < 1:2135476‑M2/35‑5 (MQ=255) cATAAAACATTACGCCACGGTACATAAAGTAaccg > 1:5231189‑M2/1‑31 (MQ=255) aTAAAACATTACGCCACGGTACATAAAGTAaccgt < 1:7869849‑M2/35‑6 (MQ=255) aTAAAACATTACGCCACGGTACATAAAGTAaccgt < 1:4237055‑M2/35‑6 (MQ=255) tAAAACATTACGCCACGGTACATAAAGTAaccgtg < 1:4866105‑M2/35‑7 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:4082735‑M2/35‑9 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:6934856‑M2/35‑9 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:2979956‑M2/35‑9 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:7531794‑M2/35‑9 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:3749042‑M2/35‑9 (MQ=255) aaaCATTACGCCACGGTACATAAAGTAaccgtggc < 1:7843581‑M2/35‑9 (MQ=255) aaCATTACGCCACGGTACATAAAGTAaccgtggcg < 1:7031354‑M2/35‑10 (MQ=255) aaCATTACGCCACGGTACATAAAGTAaccgtggcg > 1:6704550‑M2/1‑26 (MQ=255) aaCATTACGCCACGGTACATAAAGTAaccgtggcg > 1:6573050‑M2/1‑26 (MQ=255) aCATTACGCCACGGTACATAAAGTAaccgtggcgt > 1:7051231‑M2/1‑25 (MQ=255) aCATTACGCCACGGTACATAAAGTAaccgtggcgt < 1:2382411‑M2/35‑11 (MQ=255) cATTACGCCACGGTACATAAAGTAaccgtggcgta < 1:1052627‑M2/35‑12 (MQ=255) cATTACGCCACGGTACATAAAGTAaccgtggcgta < 1:6652071‑M2/35‑12 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa > 1:3930003‑M2/1‑23 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa < 1:587529‑M2/35‑13 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa > 1:4038905‑M2/1‑23 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa > 1:7839852‑M2/1‑23 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa > 1:3746293‑M2/1‑23 (MQ=255) aTTACGCCACGGTACATAAAGTAaccgtggcgtaa > 1:4975507‑M2/1‑23 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat < 1:7459286‑M2/35‑14 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat < 1:4301264‑M2/35‑14 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat > 1:7357877‑M2/1‑22 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat > 1:5724380‑M2/1‑22 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat > 1:2114044‑M2/1‑22 (MQ=255) ttACGCCACGGTACATAAAGTAaccgtggcgtaat < 1:247668‑M2/35‑14 (MQ=255) ccGCCACGGTACATAAAGTAACCGTGGCGTAATgg < 1:7824278/34‑1 (MQ=255) aCGCCACGGTACATAAAGTAACCGTGGCGTAATgg > 1:3581675/1‑35 (MQ=255) aCGCCACGGTACATAAAGTAACCGTGGCGTAATgg > 1:6967501/1‑35 (MQ=255) cGCCACGGTACATAAAGTAaccgtggcgtaatgtt > 1:503751‑M2/1‑19 (MQ=255) cGCCACGGTACATAAAGTAaccgtggcgtaatgtt > 1:913179‑M2/1‑19 (MQ=255) cGCCACGGTACATAAAGTAACCGTGGCGTAATGGc > 1:2583030/1‑35 (MQ=255) gCCGCGGTACATAAAGTAaccgtggcgtaatgttt > 1:6999870‑M2/1‑18 (MQ=255) gCCACGGTACATAAAGTAaccgtggcgtaatgttt > 1:6843073‑M2/1‑18 (MQ=255) gCCACGGTACATAAAGTAaccgtggcgtaatgttt > 1:2528831‑M2/1‑18 (MQ=255) ccACGGTACAAAAAGTAACCGTGGCGTAATGGCTa < 1:1213449/35‑1 (MQ=255) cACGGTACATAAAGTACCCGTGGCGTAATGGCTAt < 1:4193984/35‑1 (MQ=255) cACGGTACATAAAGTAACCGTGGCGTAATGGCTAt < 1:290612/35‑1 (MQ=255) cACGGTACATAAAGTAACCGTGGCGTAATGGCTAt < 1:1642114/35‑1 (MQ=255) cACGGTACATAAAGTAACCGTGGCGTAATGGCTAt < 1:4274535/35‑1 (MQ=255) cACGGTACATAAAGTAACCGTGGCGTAATGGCTAt < 1:3291663/35‑1 (MQ=255) cACGGTACATAAAGTAACCGTGGCGTAATGGCTAt < 1:2311513/35‑1 (MQ=255) aCGGTACATAAAGTAACCGTGGCGTAATGGCTATc < 1:4512835/35‑1 (MQ=255) aCGGTACATAAAGTAACCGTGGCGTAATGGCTATc < 1:1179563/35‑1 (MQ=255) cGGTACATAAAGTAaccgtggcgtaatgttttatg > 1:6977407‑M2/1‑14 (MQ=255) cGGTACATAAAGTAACCGTGGCGTAATGGCTATCa < 1:6410007/35‑1 (MQ=255) cGGTACATAAAGTAACCGTGGCGTAATGGCTATCa < 1:5059775/35‑1 (MQ=255) ggTACATAAAGTAACCGTGGCGTAATGGCTATCAg < 1:3905811/35‑1 (MQ=255) ggTACATAAAGTAACCGTGGCGTAATGGCTATCAg < 1:609709/35‑1 (MQ=255) ggTACATAAAGTAACCGTGGCGTAATGGCTATCAg < 1:3129890/35‑1 (MQ=255) ggTACATAAAGTAACCGTGGCGTAATGGCTATCAg < 1:3649053/35‑1 (MQ=255) ggTACATAAAGTAACCGTGGCGTAATGGCTATCAg < 1:5083319/35‑1 (MQ=255) gTACATAAAGTAaccgtggcgtaatgttttatgaa > 1:7718151‑M2/1‑12 (MQ=255) gTACATAAAGTAACCGTGGCGTAATGGCTATCAGa < 1:6263738/35‑1 (MQ=255) gTACATAAAGTAACCGTGGCGTAATGGCTATCAGa > 1:7513354/1‑35 (MQ=255) gTACATAAAGTAACCGTGGCGTAATGGCTATCAGa < 1:7268306/35‑1 (MQ=255) gTACATAAAGTAACCGTGGCGTAATGGCTATCAGa > 1:6722826/1‑35 (MQ=255) gTACATAAAGTAACCGTGGCGTAATGGCTATCAGa < 1:3538715/35‑1 (MQ=255) aCATAAAGTAACCGTGGCGTAATGGCTATCAGAcc > 1:4257399/1‑35 (MQ=255) cATAAAGTAACCGTGGCGTAATGGCTATCAGACCg > 1:3050165/1‑35 (MQ=255) cATAAAGTAACCGTGGCGTAATGGCTATCAGACCg < 1:1776670/35‑1 (MQ=255) cATAAAGTAACCGTGGCGTAATGGCTATCAGACCg > 1:11158/1‑35 (MQ=255) aTAAAGTAACCGTGGCGTAATGGCTATCAGACCGc > 1:738049/1‑35 (MQ=255) tAAAGTAACCGTGGCGTAATGGCTATCAGACCGCt < 1:3883871/35‑1 (MQ=255) tAAAGTAACCGTGGCGTAATGGCTATCAGACCGCt < 1:7054308/35‑1 (MQ=255) aaaGTAGCCGGGGCGTAATGGCTATCAGACCGCtt < 1:783371/35‑1 (MQ=38) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:150856/35‑1 (MQ=255) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:1026092/35‑1 (MQ=255) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:1372159/35‑1 (MQ=255) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:123176/35‑1 (MQ=255) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:5642118/35‑1 (MQ=255) aaaGTAACCGTGGCGTAATGGCTATCAGACCGCtt < 1:4620020/35‑1 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt < 1:7210881/35‑1 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt > 1:4015143/1‑35 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt > 1:341212/1‑35 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt < 1:497029/35‑1 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt > 1:1482547/1‑35 (MQ=255) aaGTAACCGTGGCGTAATGGCTATCAGACCGCttt > 1:2291654/1‑35 (MQ=255) aGTAACCGTGGCGTAATGGCTATCAGACCGCTTTa > 1:4278887/1‑35 (MQ=255) aGTAACCGTGGCGTAATGGCTATCAGACCGCTTTa > 1:5546220/1‑35 (MQ=255) gTAACCGTGGCGTAATGGCTATCAGACCGCTTTaa < 1:3518030/35‑1 (MQ=255) gTAACCGTGGCGTAATGGCTATCAGACCGCTTTaa < 1:6568612/35‑1 (MQ=255) tAACCGTGGCGTAATGGCTATCAGACCGCTTTAAt > 1:7770127/1‑35 (MQ=255) tAACCGTGGCGTAATGGCTATCAGACCGCTTTAAt > 1:1778302/1‑35 (MQ=255) tAACCGTGGCGTAATGGCTATCAGACCGCTTTAAt > 1:2593472/1‑35 (MQ=255) aaCCGTGGCGTAATGGCTATCAGACCGCTTTAATg < 1:5204472/35‑1 (MQ=255) aaCCGTGGCGTAATGGCTATCAGACCGCTTTAATg < 1:1650527/35‑1 (MQ=255) | CATTCATAAAACATTACGCCACGGTACATAAAGTAACCGTGGCGTAATGGCTATCAGACCGCTTTAATG > NC_000913/2643076‑2643144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |