| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 72 [0] | [1] 72 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 69 (0.980) | 34/66 | 0.1 | 99.3% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 1 (0.010) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
TGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756124‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > NC_000913/2791251‑2791284 TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:4517438/35‑1TGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:5038894/35‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:5524957/35‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:5188291/35‑1 GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAC < 1:7889841/35‑1 TTTACGTTGGG‑CTAAACGCAGTGAGACTCCCCACC > 1:2450369/1‑35 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC > 1:6803093/1‑35 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC < 1:3506016/35‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC < 1:3587960/35‑1 TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC < 1:5900939/35‑1 TTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT > 1:1519758/1‑35 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:7361378/1‑35 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT < 1:2095215/35‑1 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT > 1:5312253/1‑35 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:4042105/35‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:7061829/35‑1 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT > 1:5313097/1‑35 ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT < 1:3465330/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:1814632/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:1952363/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:5641922/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:2397150/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG < 1:6471714/35‑1 CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG > 1:3314158/1‑35 CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG > 1:6815828/1‑35 TAAACGCAGGTAGACTCCCCACCTTTGAAAACAGG > 1:3686511/1‑35 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG > 1:3658313/1‑35 TAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG > 1:4248668/1‑35 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA > 1:3862996/1‑35 AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA < 1:2119998/35‑1 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:3725313/1‑35 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:553712/1‑35 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:1494537/1‑35 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:1677454/1‑35 AACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT > 1:5021940/1‑35 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:1254242/35‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:6810276/35‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:6579162/35‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:4112864/35‑1 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG < 1:1955722/35‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:1570188/35‑1 CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT < 1:5801186/35‑1 GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA < 1:1524199/35‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:7201638/35‑1 CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAG < 1:2342731/35‑1 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC > 1:4342151/1‑35 AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC < 1:1531246/35‑1 GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG > 1:6599516/1‑35 GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGA < 1:4839565/35‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT < 1:6959982/35‑1 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT > 1:6539738/1‑35 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT > 1:2504858/1‑35 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT > 1:5189504/1‑35 GAGACTCCCCACCTTTGAAAACAGGATGTAGCGAT > 1:101633/1‑35 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATG > 1:1638073/1‑35 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATG > 1:3055868/1‑35 AGACTCCCCACCTTTGAAAACAGGATGTAGCGATG > 1:4854284/1‑35 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGA > 1:5545890/1‑35 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:2460155/35‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:7151548/35‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:760649/35‑1 GACTCCCCACCTTTGAAAACAGGATGTAGCGATGA < 1:1433863/35‑1 ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA < 1:7270399/35‑1 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA > 1:4492330/1‑35 CTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA > 1:5003033/1‑35 TCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC < 1:6450007/35‑1 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:632328/35‑1 CCCCACCTTTGAAAACAGGATGTAGCGATGAAACT < 1:2866672/35‑1 CCCACCTTTGAAAACAGGATGTAGCGATGAAACTT < 1:3911672/35‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:4467106/35‑1 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAA < 1:839791/35‑1 ACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC < 1:6368444/35‑1 TGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2756124‑2756159‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAAC > NC_000913/2791251‑2791284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |