| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 72 [0] | [1] 72 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 69 (0.980) | 34/66 | 0.1 | 99.3% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 1 (0.010) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
TGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGA > NC_000913/2756124‑2756193 | tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:4517438‑M1/35‑1 (MQ=255)tGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA < 1:5038894‑M1/35‑1 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:5524957‑M1/35‑2 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:5188291‑M1/35‑2 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAc < 1:7889841‑M1/35‑2 (MQ=255) tttACGTTGGG‑CTAAACGCAGTGAGACTCCCCAcc > 1:2450369‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:6803093‑M1/1‑33 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:3506016‑M1/35‑3 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:3587960‑M1/35‑3 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:5900939‑M1/35‑3 (MQ=255) ttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:1519758‑M1/1‑32 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:7361378‑M1/1‑31 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:2095215‑M1/35‑5 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt > 1:5312253‑M1/1‑31 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:4042105‑M1/35‑6 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:7061829‑M1/35‑6 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt > 1:5313097‑M1/1‑30 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:3465330‑M1/35‑6 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:1814632‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:1952363‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:5641922‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:2397150‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg < 1:6471714‑M1/35‑7 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttg > 1:3314158‑M1/1‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:6815828‑M1/1‑22 (MQ=255) tAAACGCAGGTAGACTCCCCAcctttgaaaacagg > 1:3686511‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacagg > 1:3658313‑M1/1‑21 (MQ=255) tAAACGCAGGGAGACTCCCCAcctttgaaaacagg > 1:4248668‑M1/1‑21 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacagga > 1:3862996‑M1/1‑20 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacagga < 1:2119998‑M1/35‑16 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:3725313‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:553712‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:1494537‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:1677454‑M1/1‑19 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggat > 1:5021940‑M1/1‑19 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:1254242‑M1/35‑18 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:6810276‑M1/35‑18 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:6579162‑M1/35‑18 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:4112864‑M1/35‑18 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:1955722‑M1/35‑18 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:1570188‑M1/35‑19 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:5801186‑M1/35‑19 (MQ=255) gCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:1524199‑M1/35‑20 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:7201638‑M1/35‑21 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtag < 1:2342731‑M1/35‑21 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagc > 1:4342151‑M1/1‑14 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:1531246‑M1/35‑22 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcg > 1:6599516‑M1/1‑13 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcga < 1:4839565‑M1/35‑24 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgat < 1:6959982‑M1/35‑25 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgat > 1:6539738‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgat > 1:2504858‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgat > 1:5189504‑M1/1‑11 (MQ=255) gagaCTCCCCAcctttgaaaacaggatgtagcgat > 1:101633‑M1/1‑11 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatg > 1:1638073‑M1/1‑10 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatg > 1:3055868‑M1/1‑10 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatg > 1:4854284‑M1/1‑10 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatga > 1:5545890‑M1/1‑9 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatga < 1:2460155‑M1/35‑27 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatga < 1:7151548‑M1/35‑27 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatga < 1:760649‑M1/35‑27 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatga < 1:1433863‑M1/35‑27 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:7270399‑M1/35‑28 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaa > 1:4492330‑M1/1‑7 (MQ=255) cTCCCCAcctttgaaaacaggatgtagcgatgaaa > 1:5003033‑M1/1‑7 (MQ=255) tCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:6450007‑M1/35‑30 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaact < 1:632328‑M1/35‑31 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaact < 1:2866672‑M1/35‑31 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaactt < 1:3911672‑M1/35‑32 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaa < 1:4467106‑M1/35‑34 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaa < 1:839791‑M1/35‑34 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaac < 1:6368444‑M1/35‑35 (MQ=255) | TGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGA > NC_000913/2756124‑2756193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |