| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 66 [0] | [0] 70 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 64 (0.890) | 34/68 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
TACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090313‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTA > NC_000913/3091055‑3091088 TACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCC < 1:3908414/35‑1TACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCC < 1:2177859/35‑1 ACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCT > 1:689587/1‑35 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA > 1:1394794/1‑35 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:6021868/35‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA > 1:6080607/1‑35 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:2507092/35‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:2273427/35‑1 CGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTA < 1:225991/35‑1 TTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA < 1:4510385/35‑1 TTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA < 1:2358342/35‑1 TTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA > 1:510112/1‑35 TTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA > 1:593796/1‑35 TTGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACA < 1:1624970/35‑1 TGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACAC < 1:5092017/35‑1 TGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACAC < 1:5861869/35‑1 TGCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACAC < 1:7698674/35‑1 GCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACT > 1:3633951/1‑35 GCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACT > 1:1693118/1‑35 GCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACT > 1:266548/1‑35 GCTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACT > 1:6111772/1‑35 CTGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTA > 1:4730412/1‑35 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:7649263/35‑1 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:7331229/35‑1 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:4756877/35‑1 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:4385485/35‑1 TGGCTCGTTTTAACACGGAG‑AAGTGCCTACACTAG < 1:7254144/35‑1 GCTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCG > 1:3240051/1‑35 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG < 1:3323548/35‑1 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG > 1:3911203/1‑35 CTCGTTTTAACACGGAG‑AAGTGCCTACACTAGCGG < 1:2234097/35‑1 CGTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGA > 1:7180784/1‑35 GTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGAT > 1:6963385/1‑35 GTTTTAACACGGAG‑AAGTGCCTACACTAGCGGGAT < 1:4331204/35‑1 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:7852330/1‑35 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:2966988/1‑35 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT < 1:3782346/35‑1 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT > 1:1561403/1‑35 TTTTAACACGGAG‑AAGTGCCTACACTAGCGGGATT < 1:222575/35‑1 TTTAACACGGAG‑AAGTGCCTACACTAGCGGGATTC > 1:4103061/1‑35 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT < 1:5749858/35‑1 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT < 1:1627282/35‑1 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT > 1:3286049/1‑35 TTAACACGGAG‑AAGTGCCTACACTAGCGGGATTCT > 1:2485784/1‑35 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTT > 1:654111/1‑35 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTT < 1:6096146/35‑1 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTT > 1:714305/1‑35 TAACACGGAG‑AAGTGCCTACACTAGCGGGATTCTT > 1:4693620/1‑35 AACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTT > 1:348195/1‑35 AACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTT < 1:3133425/35‑1 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTT > 1:778743/1‑35 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTT < 1:4513457/35‑1 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTT > 1:3111072/1‑35 ACACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTT < 1:6168705/35‑1 CACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTT > 1:7013817/1‑35 CACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTT < 1:1996353/35‑1 ACGGAG‑AAGTGCCTACACTAGCGGGATTCTTTTTG < 1:7384506/35‑1 AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACC > 1:5760189/1‑35 AAGTGCCTACACTAGCGGGATTCTTTTTGTTAACC > 1:1467364/1‑35 AGTGCCTACACTAGCGGGATTCTTTTTGTTAACCC > 1:5982395/1‑35 GTGCCTACACTAGCGGGATTCTTTTTGTTAACCCC < 1:3417444/35‑1 GCCTACACTAGCGGGATTCTTTTTGTTAACCCCTA < 1:348206/35‑1 GCCTACACTAGCGGGATTCTTTTTGTTAACCCCTA < 1:3518144/35‑1 GCCTACACTAGCGGGATTCTTTTTGTTAACCCCTA < 1:4891913/35‑1 TACGTTGCTGGCTCGTTTTAACACGGAGTAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3090313‑3090346‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTACACTAGCGGGATTCTTTTTGTTAACCCCTA > NC_000913/3091055‑3091088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |