| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 66 [0] | [0] 70 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 64 (0.890) | 34/68 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
GTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTAC > NC_000913/3091022‑3091089 | tacgttgctggctcgttttaacacggagaagtgcc < 1:3908414‑M2/2‑1 (MQ=255)tacgttgctggctcgttttaacacggagaagtgcc < 1:2177859‑M2/2‑1 (MQ=255) acgttgctggctcgttttaacacggagaagtgCCt > 1:689587‑M2/33‑35 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa > 1:1394794‑M2/32‑35 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa > 1:6080607‑M2/32‑35 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa < 1:6021868‑M2/4‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa < 1:2507092‑M2/4‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa < 1:2273427‑M2/4‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTa < 1:225991‑M2/4‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTaca < 1:4510385‑M2/6‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTaca > 1:593796‑M2/30‑35 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTaca > 1:510112‑M2/30‑35 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTaca < 1:2358342‑M2/6‑1 (MQ=255) ttgctggctcgttttaacacggagaagtgCCTaca < 1:1624970‑M2/6‑1 (MQ=255) tgctggctcgttttaacacggagaagtgCCTacac < 1:5092017‑M2/7‑1 (MQ=255) tgctggctcgttttaacacggagaagtgCCTacac < 1:7698674‑M2/7‑1 (MQ=255) tgctggctcgttttaacacggagaagtgCCTacac < 1:5861869‑M2/7‑1 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACt > 1:1693118‑M2/28‑35 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACt > 1:266548‑M2/28‑35 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACt > 1:3633951‑M2/28‑35 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACt > 1:6111772‑M2/28‑35 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTa > 1:4730412‑M2/27‑35 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAg < 1:7254144‑M2/10‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAg < 1:7331229‑M2/10‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAg < 1:7649263‑M2/10‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAg < 1:4756877‑M2/10‑1 (MQ=255) tggctcgttttaacacggagaagtgCCTACACTAg < 1:4385485‑M2/10‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCg > 1:3240051‑M2/24‑35 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCgg < 1:3323548‑M2/13‑1 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCgg < 1:2234097‑M2/13‑1 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCgg > 1:3911203‑M2/23‑35 (MQ=255) cgttttaacacggagaagtgCCTACACTAGCGGGa > 1:7180784‑M2/21‑35 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGAt > 1:6963385‑M2/20‑35 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGAt < 1:4331204‑M2/16‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:1561403‑M2/19‑35 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:7852330‑M2/19‑35 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:222575‑M2/17‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGAtt > 1:2966988‑M2/19‑35 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:3782346‑M2/17‑1 (MQ=255) tttaacacggagaagtgCCTACACTAGCGGGATTc > 1:4103061‑M2/18‑35 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCt < 1:1627282‑M2/19‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCt > 1:3286049‑M2/17‑35 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCt < 1:5749858‑M2/19‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCt > 1:2485784‑M2/17‑35 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCtt > 1:714305‑M2/16‑35 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCtt > 1:654111‑M2/16‑35 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCtt > 1:4693620‑M2/16‑35 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCtt < 1:6096146‑M2/20‑1 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCttt < 1:3133425‑M2/21‑1 (MQ=255) aacacggagaagtgCCTACACTAGCGGGATTCttt > 1:348195‑M2/15‑35 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCtttt > 1:3111072‑M2/14‑35 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCtttt < 1:4513457‑M2/22‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCtttt < 1:6168705‑M2/22‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCtttt > 1:778743‑M2/14‑35 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCttttt > 1:7013817‑M2/13‑35 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCttttt < 1:1996353‑M2/23‑1 (MQ=255) acggagaagtgCCTACACTAGCGGGATTCTTTTTg < 1:7384506‑M2/24‑1 (MQ=255) aagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc > 1:5760189‑M2/6‑35 (MQ=255) aagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc > 1:1467364‑M2/6‑35 (MQ=255) agtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:5982395‑M2/5‑35 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:3417444‑M2/32‑1 (MQ=255) gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:348206‑M2/34‑1 (MQ=255) gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:3518144‑M2/34‑1 (MQ=255) gCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:4891913‑M2/34‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc < 1:7477023/35‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:2170787/1‑35 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:1133775/1‑35 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc < 1:7724399/35‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:4646142/1‑35 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTAc > 1:4642313/1‑35 (MQ=255) | GTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTAC > NC_000913/3091022‑3091089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |