| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 136 [0] | [0] 135 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 128 (1.770) | 44/68 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 128 total aligned reads displayed.
CATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362128‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTC > NC_000913/3367643‑3367676 CATTCACTGTATTTATAACAACATCAATGAATACT < 1:3055063/35‑1CATTCACTGTATTTATAACAACATCAATGAATACT < 1:7138491/35‑1CATTCACTGTATTTATAACAACATCAATGAATACT < 1:1236590/35‑1CATTCACTGTATTTATAACAACATCAATGAATACT > 1:6665817/1‑35CATTCACTGTATTTATAACAACATCAATGAATACT < 1:2265581/35‑1CATTCACTGTATTTATAACAACATCAATGAATACT < 1:5275974/35‑1 ATTCACTGTATTTATAACGACATCAATGAATACTA < 1:550990/35‑1 TTCACTGTATTTATAACAACATCAATGAATACTAA < 1:4363353/35‑1 TTCACTGTATTTATAACAACATCAATGAATACTAA < 1:1473218/35‑1 TTCACTGTATTTATAACAACATCAATGAATACTAA < 1:4881069/35‑1 TTCACTGTATTTATAACAACATCAATGAATACTAA < 1:235111/35‑1 TTCACTGTATTTATAACAACATCAATGAATACTAA < 1:1572909/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:5487222/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:3408661/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1061415/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:4638697/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:5650006/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1061449/35‑1 TCACTGTATTTATAACAACATCAATGAATACTAAC < 1:1518667/35‑1 ACTGTATTTATAACAACATCAATGAATACTAACAA < 1:331728/35‑1 CTGTATTTATAACAACATCAATGAATACTAACAAT < 1:5258977/35‑1 CTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2204349/35‑1 GTATTTATAACAACATCAATGAATACTAACAATGC > 1:1538546/1‑35 GTATTTATAACAACATCAATGAATACTAACAATGC > 1:3713631/1‑35 GTATTTATAACAACATCAATGAATACTAACAATGC > 1:273869/1‑35 ATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1164587/35‑1 ATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1844489/35‑1 ATTTATAACAACATCAATGAATACTAACAATGCCG < 1:3352867/35‑1 ATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1069717/35‑1 ATTTATAACAACATCAATGAATACTAACAATGCCG < 1:1069798/35‑1 TTTATAACAACATCAATGAATACTAACAATGCCGG > 1:3159233/1‑35 TTTATAACAACATCAATGAATACTAACAATGCCGG > 1:6347587/1‑35 TTTATAACAACATCAATGAATACTAACAATGCCGG > 1:6212861/1‑35 TTATAACAACATCAATGAATACTAACAATGCCGGA > 1:7098729/1‑35 TTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4745326/1‑35 TATAACAACATCAATGAATACTAACAATGCCGGAC > 1:4524612/1‑35 ATAACAACATCAATGAATACTAACAATGCCGGACA > 1:219431/1‑35 ATAACAACATCAATGAATACTAACAATGCCGGACA > 1:5412007/1‑35 ATAACAACATCAATGAATACTAACAATGCCGGACA > 1:428875/1‑35 TAACAACATCAATGAATACTAACAATGCCGGACAG > 1:5711895/1‑35 TAACAACATCAATGAATACTAACAATGCCGGACAG > 1:786918/1‑35 TAACAACATCAATGAATACTAACAATGCCGGACAG > 1:4989520/1‑35 TAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2497562/1‑35 TAACAACATCAATGAATACTAACAATGCCGGACAG < 1:4188187/35‑1 TAACAACATCAATGAATACTAACAATGCCGGACAG < 1:4290817/35‑1 AACAACATCAATGAATACTAACAATGCCGGACAGG < 1:4178339/35‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGA > 1:931697/1‑35 ACAACATCAATGAATACTAACAATGCCGGACAGGA > 1:5889698/1‑35 ACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:1840489/35‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGA > 1:7698166/1‑35 CAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:6995245/35‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:6918350/35‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:6625417/35‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:6128173/35‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:5248683/35‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:4618787/1‑35 ACATCAATGAATACTAACAATGCCGGACAGGAGTA < 1:462807/35‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:113462/1‑35 ACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:7189686/1‑35 CATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:2331386/35‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:2248306/35‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:765672/35‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACT > 1:2799693/1‑35 ATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:829425/35‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:817467/35‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:4977666/35‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:2784580/35‑1 CAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:3059104/35‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATC > 1:6198398/1‑35 AATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:348354/35‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:4948273/35‑1 ATGAATACTAACAATGCCGGACAGGAGTCCTATCA > 1:2722439/1‑35 ATGAATACTAACAATGCCGGACAGGAGTACTATCA > 1:383034/1‑35 ATGAATACTAACAATGCCGGACAGGAGTACTATCA > 1:7320520/1‑35 ATGAATACTAACAATGCCGGACAGGAGTACTATCA > 1:628929/1‑35 ATGAATACTAACAATGCCGGACAGGAGTACTATCA > 1:391630/1‑35 ATGAATACTAACAATGCCGGACAGGAGTACTATCA > 1:6908212/1‑35 TGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:78822/1‑35 TGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:3113254/1‑35 GAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:348452/35‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:337061/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:3486680/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:112048/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:7106117/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:1478982/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:161610/1‑35 AATACTAACAATGCCGGACAGGAGTACTATCAGGC > 1:5939131/1‑35 ATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:5765430/1‑35 ATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:3932792/35‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 1:1717624/35‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:6579810/35‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:6260088/35‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:5124021/1‑35 ACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:6511478/35‑1 ACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:6273445/1‑35 ACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:364865/35‑1 ACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:2010728/35‑1 ACTAACAATGCCGGACAGGAGTACTATCAGGCATT > 1:931572/1‑35 CTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:954115/1‑35 CTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:4734694/1‑35 CATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362128‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTC > NC_000913/3367643‑3367676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |