| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 72 [0] | [0] 73 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 68 (0.970) | 40/66 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618957‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA > NC_000913/3625680‑3625713 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT < 1:4000127/35‑1GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:1730414/1‑35 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:6795626/35‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA < 1:4856848/35‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA < 1:6438076/35‑1 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA < 1:660975/35‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:7452006/35‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1067600/1‑35 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC < 1:6057709/35‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:6349422/1‑35 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:413778/1‑35 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC < 1:6919763/35‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:6925606/1‑35 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:7764165/1‑35 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 1:7655779/35‑1 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:2279105/1‑35 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:2669013/35‑1 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:3242472/35‑1 GCAGTGCTTGCCGAAGGAGGATTGAGTTACGCCAT > 1:2760748/1‑35 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT < 1:5605649/35‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT > 1:6168352/1‑35 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT < 1:6058953/35‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:4889412/35‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:1234718/35‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:7115391/1‑35 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:3455079/1‑35 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:5721371/1‑35 GTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:2983863/35‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:1865502/1‑35 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC < 1:3826138/35‑1 GCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:2517355/35‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:1340872/1‑35 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:5467316/1‑35 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:524902/1‑35 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:1217594/1‑35 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:7238495/35‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:699248/1‑35 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:3958309/35‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:113445/35‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT < 1:6204024/35‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:6509812/1‑35 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:4308474/1‑35 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 1:2183532/1‑35 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT > 1:3371206/1‑35 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 1:848167/1‑35 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 1:5836060/1‑35 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT < 1:2197697/35‑1 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT < 1:4451485/35‑1 GGAAGATTGAGTTACGCCATTGTCCCAATCGCCTT > 1:7108645/1‑35 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 1:1136273/35‑1 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC > 1:2872256/1‑35 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:1070585/1‑35 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:438197/1‑35 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:6916947/1‑35 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT < 1:1832281/35‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT < 1:5798042/35‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:3680409/1‑35 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT < 1:4381039/35‑1 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:6423418/1‑35 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGA < 1:2958901/35‑1 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGA > 1:4992365/1‑35 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:4057699/1‑35 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:6179824/1‑35 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:2122264/35‑1 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:5620790/35‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:2797295/35‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:7388220/35‑1 GAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC > 1:2233457/1‑35 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:7089617/1‑35 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGC > 1:4938886/1‑35 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA > 1:3885148/1‑35 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA > 1:6262238/1‑35 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618957‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA > NC_000913/3625680‑3625713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |