| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 72 [0] | [0] 73 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 68 (0.970) | 40/66 | 0.0 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > NC_000913/3625646‑3625714 | ggcatttgcagtgcttgccgaaggaagattgagtt < 1:6795626‑M2/1‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTa < 1:4856848‑M2/2‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTa < 1:6438076‑M2/2‑1 (MQ=255) gcatttgcagtgcttgccgaaggaagattgagtTa < 1:660975‑M2/2‑1 (MQ=255) catttgcagtgcttgccgaaggaagattgagtTAc < 1:7452006‑M2/3‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc > 1:1067600‑M2/31‑35 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc < 1:6057709‑M2/5‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc > 1:7764165‑M2/31‑35 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc > 1:6349422‑M2/31‑35 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc > 1:413778‑M2/31‑35 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc < 1:6919763‑M2/5‑1 (MQ=255) tttgcagtgcttgccgaaggaagattgagtTACGc > 1:6925606‑M2/31‑35 (MQ=255) ttgcagtgcttgccgaaggaagattgagtTACGcc < 1:7655779‑M2/6‑1 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCa < 1:3242472‑M2/7‑1 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCa < 1:2669013‑M2/7‑1 (MQ=255) tgcagtgcttgccgaaggaagattgagtTACGCCa > 1:2279105‑M2/29‑35 (MQ=255) gcagtgcttgccgaaggaggattgagtTACGCCAt > 1:2760748‑M2/28‑35 (MQ=255) gcagtgcttgccgaaggaagattgagtTACGCCAt < 1:5605649‑M2/8‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCAtt < 1:6058953‑M2/9‑1 (MQ=255) cagtgcttgccgaaggaagattgagtTACGCCAtt > 1:6168352‑M2/27‑35 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTg > 1:5721371‑M2/26‑35 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTg < 1:4889412‑M2/10‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTg < 1:1234718‑M2/10‑1 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTg > 1:3455079‑M2/26‑35 (MQ=255) agtgcttgccgaaggaagattgagtTACGCCATTg > 1:7115391‑M2/26‑35 (MQ=255) gtgcttgccgaaggaagattgagtTACGCCATTGt < 1:2983863‑M2/11‑1 (MQ=255) tgcttgccgaaggaagattgagtTACGCCATTGTc < 1:3826138‑M2/12‑1 (MQ=255) tgcttgccgaaggaagattgagtTACGCCATTGTc > 1:1865502‑M2/24‑35 (MQ=255) gcttgccgaaggaagattgagtTACGCCATTGTcc < 1:2517355‑M2/13‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc > 1:1340872‑M2/22‑35 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc < 1:7238495‑M2/14‑1 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc > 1:1217594‑M2/22‑35 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc > 1:524902‑M2/22‑35 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc > 1:5467316‑M2/22‑35 (MQ=255) cttgccgaaggaagattgagtTACGCCATTGTccc > 1:699248‑M2/22‑35 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:3958309‑M2/17‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:6204024‑M2/17‑1 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAAt > 1:6509812‑M2/19‑35 (MQ=255) gccgaaggaagattgagtTACGCCATTGTCCCAAt < 1:113445‑M2/17‑1 (MQ=255) gaaggaagattgagtTACGCCATTGTCCCAATCGt > 1:4308474‑M2/16‑35 (MQ=255) aaggaagattgagtTACGCCATTGTCCCAATCGTc > 1:2183532‑M2/15‑35 (MQ=255) aggaagattgagtTACGCCATTGTCCCAATCGTCt > 1:3371206‑M2/14‑35 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:848167‑M2/13‑35 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCtt > 1:5836060‑M2/13‑35 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:4451485‑M2/23‑1 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGTCtt < 1:2197697‑M2/23‑1 (MQ=255) ggaagattgagtTACGCCATTGTCCCAATCGCCtt > 1:7108645‑M2/13‑35 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTc < 1:1136273‑M2/24‑1 (MQ=255) gaagattgagtTACGCCATTGTCCCAATCGTCTTc > 1:2872256‑M2/12‑35 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:1070585‑M2/11‑35 (MQ=255) aagattgagtTACGCCATTGTCCCAATCGTCTTcc > 1:438197‑M2/11‑35 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt < 1:5798042‑M2/26‑1 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt < 1:1832281‑M2/26‑1 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:6916947‑M2/10‑35 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:3680409‑M2/10‑35 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt > 1:6423418‑M2/10‑35 (MQ=255) agattgagtTACGCCATTGTCCCAATCGTCTTCCt < 1:4381039‑M2/26‑1 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGa < 1:2958901‑M2/28‑1 (MQ=255) attgagtTACGCCATTGTCCCAATCGTCTTCCTGa > 1:4992365‑M2/8‑35 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:6179824‑M2/7‑35 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:5620790‑M2/29‑1 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:2122264‑M2/29‑1 (MQ=255) ttgagtTACGCCATTGTCCCAATCGTCTTCCTGaa > 1:4057699‑M2/7‑35 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:7388220‑M2/30‑1 (MQ=255) tgagtTACGCCATTGTCCCAATCGTCTTCCTGAAt < 1:2797295‑M2/30‑1 (MQ=255) gagtTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:2233457‑M2/5‑35 (MQ=255) agtTACGCCATTGTCCCAATCGTCTTCCTGAATCg > 1:7089617‑M2/4‑35 (MQ=255) gtTACGCCATTGTCCCAATCGTCTTCCTGAATCGc > 1:4938886‑M2/3‑35 (MQ=255) tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCa > 1:6262238‑M2/2‑35 (MQ=255) tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCa > 1:3885148‑M2/2‑35 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCgcag < 1:2793774/35‑1 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCgcag < 1:4450604/35‑1 (MQ=255) tACGCCATTGTCCCAATCGTCTTCCTGAATCgcag < 1:7546999/35‑1 (MQ=255) | GTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > NC_000913/3625646‑3625714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |