| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 79 [0] | [0] 75 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 73 (1.040) | 39/66 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888397‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > NC_000913/3906599‑3906632 AATAATGTAGCCTCGTGTCTTGCGAGGATGAGTGC > 1:3586150/1‑35AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1323214/1‑35AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:3467274/1‑35AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:2332462/35‑1AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:6239037/35‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:1333227/1‑35 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:4864357/35‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:3359342/1‑35 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:2790303/35‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:5828820/1‑35 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC < 1:6182642/35‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2221416/1‑35 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2106172/1‑35 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG > 1:7730232/1‑35 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG < 1:5264191/35‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG > 1:7693964/1‑35 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCG > 1:7219558/1‑35 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 1:5066217/35‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT < 1:2394420/35‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:638888/1‑35 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:2074106/35‑1 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT < 1:7210713/35‑1 GTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:2095136/1‑35 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:2485680/35‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC > 1:5898046/1‑35 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC > 1:2368506/1‑35 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC > 1:3201707/1‑35 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC > 1:4167483/1‑35 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:199820/1‑35 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:2262808/1‑35 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:7501445/1‑35 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:1413275/1‑35 GCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:4699761/1‑35 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC > 1:6795942/1‑35 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:1266438/35‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:4196501/35‑1 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:3804039/35‑1 CGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGT > 1:1570544/1‑35 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA > 1:7029184/1‑35 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:7027777/35‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTA < 1:2019956/35‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:1882539/1‑35 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:2425200/1‑35 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:5303822/1‑35 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:4029584/35‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:155301/35‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:5293697/35‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:3628042/1‑35 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:3189519/1‑35 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:5938553/1‑35 TTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC > 1:3682968/1‑35 TGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT < 1:6019266/35‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:7713502/1‑35 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGG > 1:5369462/1‑35 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT < 1:6496745/35‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT < 1:1552131/35‑1 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTT > 1:7121544/1‑35 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA > 1:3464837/1‑35 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:935709/35‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:7478105/35‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:5071133/1‑35 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG < 1:5812954/35‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:4500888/1‑35 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG < 1:5905144/35‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG > 1:2637301/1‑35 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG < 1:1130382/35‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:6558459/35‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:8807/1‑35 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:6087918/35‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:3937602/35‑1 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC > 1:5283912/1‑35 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC > 1:7079113/1‑35 AAGTGCCGACTTCACCAGTATTCTCTGGTTATGTC < 1:856739/35‑1 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA > 1:4339473/1‑35 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:4199340/35‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:172730/35‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG > 1:2798189/1‑35 GCCGACTTCACCAGTATTCTCTGGTTATGTCAGGT < 1:2644158/35‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > 1:1879332/1‑35 AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888397‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > NC_000913/3906599‑3906632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |