| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 79 [0] | [0] 75 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 73 (1.040) | 39/66 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
CATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > NC_000913/3906565‑3906633 | ataatgtagcctcgtgtcttgcgaggataagtgcc < 1:6182642‑M2/1‑1 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc > 1:3359342‑M2/35‑35 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc < 1:2790303‑M2/1‑1 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc < 1:4864357‑M2/1‑1 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2221416‑M2/35‑35 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc > 1:2106172‑M2/35‑35 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc > 1:1333227‑M2/35‑35 (MQ=255)ataatgtagcctcgtgtcttgcgaggataagtgcc > 1:5828820‑M2/35‑35 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCg > 1:7730232‑M2/34‑35 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCg < 1:5264191‑M2/2‑1 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCg > 1:7219558‑M2/34‑35 (MQ=255) taatgtagcctcgtgtcttgcgaggataagtgcCg > 1:7693964‑M2/34‑35 (MQ=255) atgtagcctcgtgtcttgcgaggataagtgcCGAc < 1:5066217‑M2/4‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACt < 1:2394420‑M2/5‑1 (MQ=255) tgtagcctcgtgtcttgcgaggataagtgcCGACt > 1:638888‑M2/31‑35 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACtt > 1:2095136‑M2/30‑35 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACtt < 1:2074106‑M2/6‑1 (MQ=255) gtagcctcgtgtcttgcgaggataagtgcCGACtt < 1:7210713‑M2/6‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTc > 1:5898046‑M2/29‑35 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTc > 1:2368506‑M2/29‑35 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTc < 1:2485680‑M2/7‑1 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTc > 1:3201707‑M2/29‑35 (MQ=255) tagcctcgtgtcttgcgaggataagtgcCGACTTc > 1:4167483‑M2/29‑35 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:2262808‑M2/27‑35 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:1413275‑M2/27‑35 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:7501445‑M2/27‑35 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:199820‑M2/27‑35 (MQ=255) gcctcgtgtcttgcgaggataagtgcCGACTTCAc > 1:4699761‑M2/27‑35 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:4196501‑M2/10‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:1266438‑M2/10‑1 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCAcc > 1:6795942‑M2/26‑35 (MQ=255) cctcgtgtcttgcgaggataagtgcCGACTTCAcc < 1:3804039‑M2/10‑1 (MQ=255) cgtgtcttgcgaggataagtgcCGACTTCACCAGt > 1:1570544‑M2/23‑35 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTa > 1:7029184‑M2/22‑35 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:7027777‑M2/14‑1 (MQ=255) gtgtcttgcgaggataagtgcCGACTTCACCAGTa < 1:2019956‑M2/14‑1 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:2425200‑M2/21‑35 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:1882539‑M2/21‑35 (MQ=255) tgtcttgcgaggataagtgcCGACTTCACCAGTAt > 1:5303822‑M2/21‑35 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:4029584‑M2/16‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:155301‑M2/16‑1 (MQ=255) gtcttgcgaggataagtgcCGACTTCACCAGTAtt < 1:5293697‑M2/16‑1 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:3628042‑M2/19‑35 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:3189519‑M2/19‑35 (MQ=255) tcttgcgaggataagtgcCGACTTCACCAGTATtc > 1:5938553‑M2/19‑35 (MQ=255) ttgcgaggataagtgcCGACTTCACCAGTATtctc > 1:3682968‑M2/17‑35 (MQ=255) tgcgaggataagtgcCGACTTCACCAGTATTctct < 1:6019266‑M2/20‑1 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:5369462‑M2/14‑35 (MQ=255) cgaggataagtgcCGACTTCACCAGTATTCTCTgg > 1:7713502‑M2/14‑35 (MQ=255) gaggataagtgcCGACTTCACCAGTATTCTCTGGt < 1:6496745‑M2/23‑1 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGtt < 1:1552131‑M2/24‑1 (MQ=255) aggataagtgcCGACTTCACCAGTATTCTCTGGtt > 1:7121544‑M2/12‑35 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:7478105‑M2/25‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTa < 1:935709‑M2/25‑1 (MQ=255) ggataagtgcCGACTTCACCAGTATTCTCTGGTTa > 1:3464837‑M2/11‑35 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg < 1:5905144‑M2/27‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg < 1:1130382‑M2/27‑1 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:2637301‑M2/9‑35 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:4500888‑M2/9‑35 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg > 1:5071133‑M2/9‑35 (MQ=255) ataagtgcCGACTTCACCAGTATTCTCTGGTTATg < 1:5812954‑M2/27‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:6558459‑M2/28‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:3937602‑M2/28‑1 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGt > 1:8807‑M2/8‑35 (MQ=255) taagtgcCGACTTCACCAGTATTCTCTGGTTATGt < 1:6087918‑M2/28‑1 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTc > 1:7079113‑M2/7‑35 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTc > 1:5283912‑M2/7‑35 (MQ=255) aagtgcCGACTTCACCAGTATTCTCTGGTTATGTc < 1:856739‑M2/29‑1 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCa > 1:4339473‑M2/6‑35 (MQ=255) agtgcCGACTTCACCAGTATTCTCTGGTTATGTCa < 1:4199340‑M2/30‑1 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg > 1:2798189‑M2/4‑35 (MQ=255) tgcCGACTTCACCAGTATTCTCTGGTTATGTCAgg < 1:172730‑M2/32‑1 (MQ=255) gcCGACTTCACCAGTATTCTCTGGTTATGTCAGGt < 1:2644158‑M2/33‑1 (MQ=255) cCGACTTCACCAGTATTCTCTGGTTATGTCAGGtt > 1:1879332‑M2/2‑35 (MQ=255) cGACTTCACCAGTATTCTCTGGTTATGTCAGGttt < 1:6925521/35‑1 (MQ=255) | CATAGCAAGGACCTTTTTTATAAACAAAAAAACCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTT > NC_000913/3906565‑3906633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |