| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 54 [0] | [0] 53 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 52 (0.720) | 30/68 | 0.2 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
ATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299594‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > NC_000913/4325166‑4325198 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGG > 1:5838106/1‑35 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGA < 1:1618186/35‑1 ACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 1:39857/35‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:1190421/1‑35 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:6607932/1‑35 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:4477625/35‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:4343077/1‑35 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:2128314/35‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 1:3825033/35‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAG > 1:2161282/1‑35 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGC > 1:7854629/1‑35 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 1:7742384/35‑1 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 1:6634202/35‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:7754699/35‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCC < 1:5988770/35‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:4265722/35‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:5504604/35‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCC < 1:1701679/35‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:5800726/35‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:2273861/35‑1 AGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:5277838/35‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTA < 1:6956138/35‑1 GATTTCATCAACTGAATGGATGCAGCCTCCCTAAA > 1:1739099/1‑35 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:3347922/1‑35 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:356068/1‑35 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 1:1758659/1‑35 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:5657/35‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAA > 1:1210308/1‑35 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAA > 1:2240858/1‑35 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA > 1:1848459/1‑35 TTCATCAACTGAATGGATGCAGCCTCCCTAAAAAA > 1:7119205/1‑35 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG > 1:107039/1‑35 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG > 1:4793486/1‑35 CAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:330348/35‑1 CAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:7745970/35‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:6527728/1‑35 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:1470245/1‑35 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:7035813/35‑1 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:2178731/35‑1 TGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCA < 1:4605841/35‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:6058089/35‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:5226485/35‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:4899180/35‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:3119491/35‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:2057033/1‑35 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCCTCG > 1:1592021/1‑35 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCc > 1:1291950/1‑34 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:5568058/1‑35 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:4145771/1‑35 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCG > 1:3531035/1‑35 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:6514973/1‑35 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:25680/1‑35 ATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299594‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > NC_000913/4325166‑4325198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |