| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 54 [0] | [0] 53 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 52 (0.720) | 30/68 | 0.2 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
GATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGT > NC_000913/4299593‑4299660 | gATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:836907/35‑1 (MQ=255)gATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 1:3467650/35‑1 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGg > 1:5838106‑M1/1‑34 (MQ=255) tACCCGCCGCCCAGCGATTTCATCAACTGAATGga < 1:1618186‑M1/35‑3 (MQ=255) aCCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:39857‑M1/35‑4 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:1190421‑M1/1‑31 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:6607932‑M1/1‑31 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatg < 1:4477625‑M1/35‑5 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:4343077‑M1/1‑31 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatg < 1:2128314‑M1/35‑5 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgca < 1:3825033‑M1/35‑7 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcag > 1:2161282‑M1/1‑28 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagc < 1:7742384‑M1/35‑9 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagc > 1:7854629‑M1/1‑27 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagc < 1:6634202‑M1/35‑9 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcct < 1:7754699‑M1/35‑11 (MQ=255) ccAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:5988770‑M1/35‑13 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:5504604‑M1/35‑14 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:4265722‑M1/35‑14 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccc < 1:1701679‑M1/35‑14 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccct < 1:5800726‑M1/35‑15 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccct < 1:5277838‑M1/35‑15 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccct < 1:2273861‑M1/35‑15 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctcccta < 1:6956138‑M1/35‑16 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaa > 1:1739099‑M1/1‑18 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaa > 1:356068‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaa > 1:3347922‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaa < 1:5657‑M1/35‑19 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaa > 1:1758659‑M1/1‑17 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaa > 1:2240858‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaa > 1:1210308‑M1/1‑16 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaa > 1:7119205‑M1/1‑15 (MQ=255) ttCATCAACTGAATGgatgcagcctccctaaaaaa > 1:1848459‑M1/1‑15 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaag > 1:107039‑M1/1‑14 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtg > 1:4793486‑M1/1‑12 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggc < 1:7745970‑M1/35‑26 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggc < 1:330348‑M1/35‑26 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggct > 1:6527728‑M1/1‑9 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctc < 1:7035813‑M1/35‑28 (MQ=255) aCTGAATGgatgcagcctccctaaaaaagtggctc > 1:1470245‑M1/1‑8 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctcca < 1:4605841‑M1/35‑30 (MQ=255) tGAATGgatgcagcctccctaaaaaagtggctcca < 1:2178731‑M1/35‑30 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccat < 1:4899180‑M1/35‑31 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccat < 1:6058089‑M1/35‑31 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccat < 1:5226485‑M1/35‑31 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccat < 1:3119491‑M1/35‑31 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatc > 1:2057033‑M1/1‑4 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccctcg > 1:1592021‑M1/1‑3 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcg > 1:5568058‑M1/1‑3 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcg > 1:4145771‑M1/1‑3 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcg > 1:3531035‑M1/1‑3 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcc > 1:1291950‑M1/1‑3 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgt > 1:6514973‑M1/1‑2 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgt > 1:25680‑M1/1‑2 (MQ=255) | GATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGT > NC_000913/4299593‑4299660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |