| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 1 (0.010) | 92 (1.350) | 45/64 | 0.0 | 99.0% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 1 (0.010) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400254‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > NC_000913/4400296‑4400328 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:6052577/1‑35CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA > 1:4131585/1‑35 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:6065720/1‑35 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:5798420/1‑35 AAAGTACAAATAAGCATATAAGGAAAAGAGAGAAG > 1:7678519/1‑35 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:611600/1‑35 AAGTACAAATAAGCATATAAGGAAAAGAGAGAAGG > 1:3082850/1‑35 AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:4455807/1‑35 AGTACAAATAAGCATATAAGGAAAAGAGAGAAGGG > 1:5740188/1‑35 GTACAAATAAGCATATAAGGAAAAGAGAGAAGGGG > 1:4791862/1‑35 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:1665598/1‑35 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 1:76488/35‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC < 1:7620168/35‑1 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:4915839/1‑35 TACAAATAAGCATATAAGGAAAAGAGAGAAGGGGC > 1:635290/1‑35 ACAAATAAGCATATAAGGAAAAGAGAGAAGGGGCA < 1:7728317/35‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:5150322/35‑1 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4069787/1‑35 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA > 1:4185037/1‑35 CAAATAAGCATATAAGGAAAAGAGAGAAGGGGCAA < 1:4230038/35‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:1989553/35‑1 AAATAAGCATATAAGGAAAAGAGAGAAGGGGCAAT < 1:6621646/35‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:2933936/35‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:4188361/35‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC < 1:1160428/35‑1 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:6411358/1‑35 AATAAGCATATAAGGAAAAGAGAGAAGGGGCAATC > 1:6135693/1‑35 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT < 1:833061/35‑1 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:1644922/1‑35 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:362454/1‑35 ATAAGCATATAAGGAAAAGAGAGAAGGGGCAATCT > 1:4852386/1‑35 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:7598440/35‑1 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:4714727/1‑35 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:1430207/1‑35 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:160655/1‑35 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT < 1:4110701/35‑1 TAAGCATATAAGGAAAAGAGAGAAGGGGCAATCTT > 1:2436574/1‑35 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:1648324/35‑1 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT > 1:7412165/1‑35 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT > 1:5652314/1‑35 AAGCATATAAGGAAAAGAGAGAAGGGGCAATCTTT < 1:7066159/35‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:7121086/1‑35 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:947290/1‑35 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:4657907/1‑35 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA < 1:2562614/35‑1 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1189419/1‑35 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:1867279/1‑35 AGCATATAAGGAAAAGAGAGAAGGGGCAATCTTTA > 1:2291352/1‑35 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:855785/35‑1 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC > 1:687092/1‑35 GCATATAAGGAAAAGAGAGAAGGGGCAATCTTTAC < 1:2221835/35‑1 CATATAAGGAAAAGAGAGAAGGGGCAATCTTTACA > 1:74275/1‑35 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:7197360/35‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:4543617/35‑1 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA > 1:2760355/1‑35 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA > 1:2391912/1‑35 ATATAAGGAAAAGAGAGAAGGGGCAATCTTTACAA < 1:5179570/35‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG < 1:213325/35‑1 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:1389536/1‑35 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:6475101/1‑35 TATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAG > 1:2656376/1‑35 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA < 1:7646504/35‑1 ATAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGA > 1:4530341/1‑35 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:6487169/1‑35 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:7107150/1‑35 TAAGGAAAAGAGAGAAGGGGCAATCTTTACAAGAT > 1:7299442/1‑35 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC > 1:6293014/1‑35 AAGGAAAAGAGAGAAGGGGCAATCTTTACAAGATC < 1:7116214/35‑1 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:325349/1‑35 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:2220790/1‑35 AGGAAAAGAGAGAAGGGGCAATCTTTACAAGATCC > 1:3280517/1‑35 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:2501470/35‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG > 1:4815081/1‑35 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:3790408/35‑1 GGAAAAGAGAGAAGGGGCAATCTTTACAAGATCCG < 1:1884727/35‑1 AAAAGAGAGAAGGGGCAATCTTTACAAGATCCGTT > 1:3328611/1‑35 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:6287766/1‑35 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:2008692/1‑35 AAAGAGAGAAGGGGCAATCTTTACAAGATCCGTTC > 1:3256300/1‑35 AAGAGAGAAGGGGCAATCTTTACAAGATCCGTTCC < 1:4909262/35‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:7611576/35‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:1034502/35‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:6601228/1‑35 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:2820633/35‑1 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG > 1:4932146/1‑35 GAGAGAAGGGGCAATCTTTACAAGATCCGTTCCTG < 1:729954/35‑1 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA > 1:7103950/1‑35 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA > 1:5729134/1‑35 AGAGAAGGGGCAATCTTTACAAGATCCGTTCCTGA < 1:5411070/35‑1 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:5411649/1‑35 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA < 1:4017509/35‑1 GAGAAGGGGCAATCTTTACAAGATCCGTTCCTGAA > 1:4468562/1‑35 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:2725852/1‑35 GAAGGGGCAATCTTTACAAGATCCGTTCCTGAACG > 1:7187557/1‑35 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > 1:738267/1‑35 AAGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > 1:2705057/1‑35 CAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4400254‑4400288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGC > NC_000913/4400296‑4400328 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |