| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 88 [0] | [0] 83 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 78 (1.110) | 43/66 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555456‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > NC_000913/4597014‑4597047 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1068528/35‑1TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:807550/35‑1TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:3885408/1‑35TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:4400461/35‑1TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1656834/1‑35TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1905925/35‑1 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:1786688/35‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:3302519/35‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA > 1:7706114/1‑35 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:1298935/1‑35 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:5009224/1‑35 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:5326899/35‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:2877330/35‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:7159997/1‑35 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA > 1:589213/1‑35 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA > 1:5501051/1‑35 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA < 1:736683/35‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA > 1:96089/1‑35 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG > 1:4698140/1‑35 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG > 1:2524554/1‑35 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:2716190/35‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:1472373/35‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:1426498/35‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT > 1:4672521/1‑35 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT > 1:5126220/1‑35 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT > 1:348694/1‑35 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT > 1:7616162/1‑35 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT > 1:2202312/1‑35 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA < 1:7885543/35‑1 TAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA < 1:780726/35‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:2830293/35‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1228653/1‑35 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:1603597/35‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:416796/35‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:261163/1‑35 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:3147172/35‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:1240631/35‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:6721329/35‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:3640782/35‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:905690/35‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:7499697/35‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:7776653/35‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA < 1:6791764/35‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:6892339/1‑35 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA > 1:4132215/1‑35 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:6937334/35‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA > 1:2497468/1‑35 CATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:5727986/35‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:6629296/1‑35 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:7787986/35‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:4734760/35‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG > 1:1418966/1‑35 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:4496701/35‑1 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:5121098/35‑1 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:6926816/35‑1 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC > 1:5138364/1‑35 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:2143768/35‑1 TTCCTGGTAGTAAGGCGAGCTTATTAAAGTTGCCA > 1:6128628/1‑35 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:7740362/35‑1 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:4027012/35‑1 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:2091141/35‑1 TTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:4750172/35‑1 TCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:4370839/35‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:862548/35‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:100623/35‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC > 1:4566484/1‑35 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC > 1:4001320/1‑35 TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:3779672/35‑1 TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:3521578/35‑1 TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:3989532/35‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:2157399/35‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:7368648/35‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG > 1:2561859/1‑35 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:4289343/1‑35 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:4700052/1‑35 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:6577317/1‑35 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:7828662/1‑35 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:1887062/1‑35 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:740988/1‑35 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT > 1:1333031/1‑35 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT > 1:5527595/1‑35 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:4667388/35‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:730591/35‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:6275680/1‑35 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > 1:1030940/1‑35 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:7463491/35‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:5682841/35‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:5650476/35‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555456‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC > NC_000913/4597014‑4597047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |