| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 88 [0] | [0] 83 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 78 (1.110) | 43/66 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTA > NC_000913/4555456‑4555524 | tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1068528‑M1/35‑1 (MQ=255)tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:807550‑M1/35‑1 (MQ=255)tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:3885408‑M1/1‑35 (MQ=255)tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:4400461‑M1/35‑1 (MQ=255)tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1656834‑M1/1‑35 (MQ=255)tAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:1905925‑M1/35‑1 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:1786688‑M1/35‑2 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:3302519‑M1/35‑3 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa > 1:7706114‑M1/1‑33 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:1298935‑M1/1‑32 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:5009224‑M1/1‑32 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:5326899‑M1/35‑4 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg < 1:2877330‑M1/35‑5 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:7159997‑M1/1‑31 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcga > 1:589213‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcga > 1:5501051‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcga < 1:736683‑M1/35‑8 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcga > 1:96089‑M1/1‑28 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgag > 1:4698140‑M1/1‑27 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgag > 1:2524554‑M1/1‑27 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga < 1:2716190‑M1/35‑10 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:1472373‑M1/35‑11 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:1426498‑M1/35‑11 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagatt > 1:4672521‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagatt > 1:5126220‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagatt > 1:348694‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagatt > 1:7616162‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagatt > 1:2202312‑M1/1‑24 (MQ=255) tAGTACTCATTCTTCCTGGTAGTaaggcgagatta < 1:7885543‑M1/35‑13 (MQ=255) tAGTACTCATTCTTCCTGGTAGTaaggcgagatta < 1:780726‑M1/35‑13 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattat < 1:2830293‑M1/35‑14 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:1228653‑M1/1‑22 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattat < 1:1603597‑M1/35‑14 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattat < 1:416796‑M1/35‑14 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:261163‑M1/1‑22 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:3147172‑M1/35‑15 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:1240631‑M1/35‑15 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:6721329‑M1/35‑15 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:3640782‑M1/35‑15 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:905690‑M1/35‑16 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:7499697‑M1/35‑16 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:7776653‑M1/35‑16 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:6791764‑M1/35‑16 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:6892339‑M1/1‑20 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaa > 1:4132215‑M1/1‑19 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaa < 1:6937334‑M1/35‑18 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaa > 1:2497468‑M1/1‑18 (MQ=255) cATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:5727986‑M1/35‑20 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagtt > 1:6629296‑M1/1‑15 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttg < 1:7787986‑M1/35‑22 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttg < 1:4734760‑M1/35‑22 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttg > 1:1418966‑M1/1‑14 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttg < 1:4496701‑M1/35‑22 (MQ=255) tcttcCTGGTAGTaaggcgagattattaaagttgc < 1:5121098‑M1/35‑23 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgcc < 1:6926816‑M1/35‑24 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgcc > 1:5138364‑M1/1‑12 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgcc < 1:2143768‑M1/35‑24 (MQ=255) ttcCTGGTAGTaaggcgagcttattaaagttgcca > 1:6128628‑M1/1‑11 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgcca < 1:7740362‑M1/35‑25 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgcca < 1:4027012‑M1/35‑25 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgcca < 1:2091141‑M1/35‑25 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgcca < 1:4750172‑M1/35‑25 (MQ=255) tcCTGGTAGTaaggcgagattattaaagttgccat < 1:4370839‑M1/35‑26 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatg < 1:862548‑M1/35‑27 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatg < 1:100623‑M1/35‑27 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgc > 1:4566484‑M1/1‑8 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgc > 1:4001320‑M1/1‑8 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgca < 1:3779672‑M1/35‑29 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgca < 1:3521578‑M1/35‑29 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgca < 1:3989532‑M1/35‑29 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcag < 1:2157399‑M1/35‑30 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcag < 1:7368648‑M1/35‑30 (MQ=255) ggTAGTaaggcgagattattaaagttgccatgcag > 1:2561859‑M1/1‑6 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagc > 1:4289343‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagc > 1:4700052‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagc > 1:6577317‑M1/1‑5 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcg > 1:7828662‑M1/1‑4 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcg > 1:1887062‑M1/1‑4 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcg > 1:740988‑M1/1‑4 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgt > 1:1333031‑M1/1‑3 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgt > 1:5527595‑M1/1‑3 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgt < 1:4667388‑M1/35‑33 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtc < 1:730591‑M1/35‑34 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtc > 1:6275680‑M1/1‑2 (MQ=255) taaggcgagattattaaagttgccatgcagcgtcc > 1:1030940‑M1/1‑1 (MQ=255) taaggcgagattattaaagttgccatgcagcgtcc < 1:7463491‑M1/35‑35 (MQ=255) taaggcgagattattaaagttgccatgcagcgtcc < 1:5682841‑M1/35‑35 (MQ=255) taaggcgagattattaaagttgccatgcagcgtcc < 1:5650476‑M1/35‑35 (MQ=255) | TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTA > NC_000913/4555456‑4555524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |